Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2329 ATGGCGCCTCCGATTCCGAAAGTTCTTATGGTGGCAGAGAAGCCAAGCATCGCTCTCTCCATTGCTTCCGTTCTCTCCCGCGGCCAGATGTTCACAAGAAAAGGAAGCACAGAAATTCATGAATTCGAGGGGAAGTTTTTTGGATCGCATGCACGTTTTAAAGTTACATCTGTTATTGGCCACGTGTTCAGCGTAGATTTTCCTGGTAAATATCAAGATTGGAAAGCCACGGATCCGTTAGATCTTTTTCAGGCTCAGGTTATAAAGACCGAATCAAACCCAAAGGCACATATTTGTAGACATTTAAACCAAGAAGCTCGTGGATGTCGTTATTTGGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAAGTTTTGGAGTCAACTGGTTTCAATATAAATGACGCTTATCGTGCACGATTTTCTTCTGTTACTGAGAAAGATGTTCTGAAGGCTCTAGACAACCTTGTCAGACCCAACAGAGATGAGGCACTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAGACAAGTTATTTCCAAGGAAAATACGGGAACCTAGATTCTCGAGTCATCTCCTATGGACCATGCCAAACTCCCACCTTAGGATTTTGTGTGCAGCGGTATTTACAAATAAACACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCATCCTTACATATTTCAAAATGGCTATGAAATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAATATTGTTGCCGAAGATGGACTTTTGGAAGTTACTGAAACATCAGAAAAACAGGAAACAAAAGGTCGCCCCGTTGGTCTAAACACAGTGAATCTTTTGAAGGTTGCTTCAAGTGCTCTGGGCTTTGGACCTCATATGGCCATGCAACTAGCTGAACGGTTGTATACACAAGGTTTCATCAGCTATCCACGCACTGAAAGCACAGCATACCCTCCTTCATTTGACTATCGCGGTGTACTCTCTGCACAAACAAATAATCCAACCTGGGGTAATTATGTACAAGGACTACTTACCAGTGGCTATCAAAAACCTCGAGTGGGAACAGATGCAGGCGACCATCCTCCCATTACTCCAATGAGATCAGCAGCAGAGGATATGCTAGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAACACTTCATAGGAACAGTGTCTCCAGACTGCAAGTATACAAAGAGAAAGGTTGAGTTTTCAATTGGTGGAGAGTTGTTTCATTGTACAGGGCAGCATGTTGTCACCAAAGGATTTACAGCTATCATGCCTTGGTTGGCCATAAATGATAAAAATATTCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCAAAATTGGAGCTCTATGAGGGGAGTACCACACCTCCGGATTTTCTTACTGAAAGTGAGCTGATCTCCCTGATGGAGAAAAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCCCATTAGGCATAACTTTAGTACGAGGTTATCAATCAATTGATCCAGATCTCTGCCTGCCTGATATCCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCTAAGGGTCAGGTAGATCATCATCGTGTAGTGCAGCATGTAATCCAACAGTTCAAGCAGAAGTTTAGTTACTTTGTCAAGAAGATTGAAGACATGGATGCATTATTTGAAGCACAATTTTCTGCACTTACTGATTCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGCGATATATGAAGTATATTTCTTCTCAGCCATCACGATTGTATTGTGGTACATGTGAGGAGGTTTATTATCTTCCACAGAATGGCACAATCAAGCTGTACAAAGAATTATCTTGTCCTCTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGATGGTAAATCATTTCCACTATGCCCATATTGCTACAGCAATCCCCCATTTGAAGGTATTGAAACACTCATCAGTGCGACTAAAACTAACACTCCTGGCAAGATTGGCAAGGGAGCTGGCATGGCCTGCATCCTATGTCCTCATCCCACTTGCCCAAATTCTGTAGTTTCCCAGGGTGTATGTGCGTGTCCAGAGTGCAGTGGGACACTTGTCTTAGATCCCGTAAGTGCTCCCAAATGGAGACTTTGTTGCAATATGTGCAATTGTCTAGTTTTTCTAGCACAAGGTGCTCATAGGATCTCCACAACCAAAGAACGATGCCCTGAATGTGACTCTTTAATCCTAGAAGTGGACTTCAACAAAAAAACAACTCCTCTTGAAGACGGATCTACCTTGCACCGTGGTTGCATTCTTTGTGATGAATTGCTTCATTCCCTTGTGAAAATGAAACATGGGAGAAGCTTCAAGCATATGAGATCGCGAGGAAGAGGTAGAGGAACAAGAAAAGGTGGATATAGGGGCAGAGGACGCGGGGGTGGAAAAATGATGGATCCAAAAATGAGCTTCCGAGATTTCTAA 2595 0.4204 MAPPIPKVLMVAEKPSIALSIASVLSRGQMFTRKGSTEIHEFEGKFFGSHARFKVTSVIGHVFSVDFPGKYQDWKATDPLDLFQAQVIKTESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVLESTGFNINDAYRARFSSVTEKDVLKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIFQNGYEIQLEWQRGKLFDINVAMMFQNIVAEDGLLEVTETSEKQETKGRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYTQGFISYPRTESTAYPPSFDYRGVLSAQTNNPTWGNYVQGLLTSGYQKPRVGTDAGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYTKRKVEFSIGGELFHCTGQHVVTKGFTAIMPWLAINDKNIPSFIKGQKIEVSKLELYEGSTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIQQFKQKFSYFVKKIEDMDALFEAQFSALTDSGRILSKCGKCLRYMKYISSQPSRLYCGTCEEVYYLPQNGTIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYSNPPFEGIETLISATKTNTPGKIGKGAGMACILCPHPTCPNSVVSQGVCACPECSGTLVLDPVSAPKWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSLILEVDFNKKTTPLEDGSTLHRGCILCDELLHSLVKMKHGRSFKHMRSRGRGRGTRKGGYRGRGRGGGKMMDPKMSFRDF* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2329 864 CDD TOP1Ac 166 584 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 SMART toprim5 7 138 IPR006171 -
Apr10g2329 864 SMART topIaneu2 281 536 IPR003602 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 PRINTS Prokaryotic DNA topoisomerase I signature 112 125 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 PRINTS Prokaryotic DNA topoisomerase I signature 205 223 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 PRINTS Prokaryotic DNA topoisomerase I signature 323 332 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 PRINTS Prokaryotic DNA topoisomerase I signature 400 416 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 PRINTS Prokaryotic DNA topoisomerase I signature 498 512 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 Pfam DNA topoisomerase 163 574 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 CDD TOPRIM_TopoIA_TopoIII 7 160 IPR034144 -
Apr10g2329 864 ProSiteProfiles Toprim domain profile. 7 150 IPR006171 -
Apr10g2329 864 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 318 332 IPR023406 GO:0003917
Apr10g2329 864 MobiDBLite consensus disorder prediction 826 864 - -
Apr10g2329 864 Gene3D Topoisomerase I, domain 2 170 584 IPR013824 -
Apr10g2329 864 Gene3D Topoisomerase I, domain 4 289 414 IPR013826 -
Apr10g2329 864 Gene3D Topoisomerase I, domain 3 229 482 IPR013825 -
Apr10g2329 864 MobiDBLite consensus disorder prediction 826 847 - -
Apr10g2329 864 SMART topIban2 139 235 IPR003601 GO:0003677|GO:0003916|GO:0006265
Apr10g2329 864 Gene3D - 2 163 - -
Apr10g2329 864 PANTHER PROKARYOTIC DNA TOPOISOMERASE 6 839 IPR000380 GO:0003677|GO:0003917|GO:0006265
Apr10g2329 864 SUPERFAMILY Prokaryotic type I DNA topoisomerase 7 624 IPR023405 -
Apr10g2329 864 PANTHER DNA TOPOISOMERASE 3-BETA-1 6 839 - -
Apr10g2329 864 Pfam Toprim domain 8 147 IPR006171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2329 Apr-Chr10 35220211 35229563 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2329 K03165 - gmx:100791807 1637.47