Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2312 ATGTCGCAGGTCGATAACAGAAATTCGTCAGCTGCTAAGCGTGCCAGGACTGATGGTAGTCGGAGGGAAGACGATTGGACTTGCCCTAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACATGTAATATGCGTAATTGCACTCAACCAAGGCCAGCTGATCATAATTCAAAATCTGCTGCCAAGCCTCTACAAGCTCCTCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACTCCCTCTTCTATATATCTTGGTGTCCCACCATATGGGTCGTCTCTCTTCAATGGATCATCTATTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGCAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCTACACCCTACACCAGTGGATCCATGATTGGAAATGGTGGGATCTATGGCATGCCCCAACTTCTGGATCGGTATGGCCTGGGTGTGCCTATTGGACCTGGAACGATGGGCGCTAGGCCAGGATTTTTTCGTGATGATAAGTCTCAGAAAAAGGGTGCAGATGCGACTCGGGACAATGACTGGACATGTCCAAAATGTGGTAACGTCAATTTCTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGGCCTCAAAGTCTGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAATAACATAAACTACCCGTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAACCAACTGAATCAGAAAAATCTCCTTCTCCAGTTGCGGATCAAAATGATCAGTGA 858 0.4569 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSIPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTSGSMIGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFRDDKSQKKGADATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPTESEKSPSPVADQNDQ* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2312 285 MobiDBLite consensus disorder prediction 1 25 - -
Apr10g2312 285 PANTHER ZINC FINGER PROTEIN 5 276 - -
Apr10g2312 285 SUPERFAMILY Ran binding protein zinc finger-like 233 271 IPR036443 -
Apr10g2312 285 SUPERFAMILY Ran binding protein zinc finger-like 188 225 IPR036443 -
Apr10g2312 285 MobiDBLite consensus disorder prediction 179 193 - -
Apr10g2312 285 Gene3D - 14 54 - -
Apr10g2312 285 Gene3D - 187 225 - -
Apr10g2312 285 Gene3D - 228 272 - -
Apr10g2312 285 MobiDBLite consensus disorder prediction 11 25 - -
Apr10g2312 285 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Apr10g2312 285 PANTHER OS08G0521400 PROTEIN 5 276 - -
Apr10g2312 285 MobiDBLite consensus disorder prediction 264 285 - -
Apr10g2312 285 MobiDBLite consensus disorder prediction 50 74 - -
Apr10g2312 285 MobiDBLite consensus disorder prediction 174 193 - -
Apr10g2312 285 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Apr10g2312 285 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Apr10g2312 285 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Apr10g2312 285 SMART zf_4 195 221 IPR001876 -
Apr10g2312 285 SMART zf_4 24 50 IPR001876 -
Apr10g2312 285 SMART zf_4 241 267 IPR001876 -
Apr10g2312 285 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2312 Apr-Chr10 35123953 35128182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2312 180 264 EF-hand Containing Proteins AT1G55040 32.941 1.01e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2312 - - gmx:100796535 593.578