Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2295 ATGTCGCTGGCATCATTCTCCATGCTCCGCCACCGCGCGGTGGCTTCCGCCGCGCCGCTCCTTCTGCGCCGCTTCCGGTGTTTCTCAATCGCCGCCGGACAACAAAACCCTAACAAGCATCAACAAGCAGCGCTGAGCAAGAACCTGTGGAAGGCGAAGCAAACCTTGAAGGAGTATTCATCTCTAGCTCCCGTTCTCTCCCTCGAAGACAATCCTCCTCTCTCTGAATCGCAAGCCATTGGTGTTGTGGCAGCTTCGCAGGCGAACTTCATGCGCGTCATTGTTCCCGAAGAAGGTTCTGGAAGCTTCCATGGAGTTGAGATTCTCTGTGTGGTAAGGGCGCTGTTGAAGAAGATAAAGCGGAGGGTGATGGTTGGGGACAAGGTTCTGGTAGGTTCTGTGGATTGGGTGGATCGTAGGGGCATGATTGAGAATGTGTTCCAGCGAAGTTCAGAGATTCTTGACCCTCCCGTTGCCAACGTTGACCATTTGCTGGTTCTGTTCTCGCTCGATCAGCCCAAGGTTGAACCATTCACGCTGACACGGTTCCTGGTCGAAGCTGAGTCCACTGGAATTCCCTTAACCCTGGCACTTAACAAGATAGAGCTTGTGGATAAAGAGACCGTGGATTCCTGGAAGGCTAGGGTACGTGGCTGGGGTTATGAACCAGTTCTTTGCAGTGTGGAATCTGGATATGGACTTGATCTTCTTGCATTTAAGTTGAGAGATCAAACTACGGTGATTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTAAGAAGTAATCCTCGTGTTTCTGATGCTGCAGAAGGGGAGAATTGGTTTGAGCCTATTTTAGGAAGTAAGTGGCTTGAGGATCAGCGAGTTGGGGAGGTTTCGACAAGAAGTGGCAGAGGGAAGCATACTACTCGCCACGTCTCTCTGCTTCCACTGTCGGGAGGGGGTTTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACGAAGCAGTCTCTTGCACAAACGTTTCCTGAAATCAGGAAAGCACTCAGTACTGACAAGCCTGCTAAATGTGCGTTTAACAATTGCTTGCATGTGGGTGAACCTGGGTGCATTGTGAAGGGGGATTGGGAAAGATATTCATTTTACTTTCAACTTCTGGATGAAATCAGAATACGGGAGGAGTTCCAGTTGAGGACATTTGGAACCAAAAGAGAAGGCGATGTAAGGTTGAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCAAGGCTGGAGCCCAAGAAGCATAGGAGACAATCTCGGAAGAGAATTAACCAGTCAATTTTGGATGAATTGAATGATGACGACGATTTGATTGACGAGGAGAATGACCCCGTTTTAAGGGCGCTGAGAAATGAAAACTCTTAA 1413 0.489 MSLASFSMLRHRAVASAAPLLLRRFRCFSIAAGQQNPNKHQQAALSKNLWKAKQTLKEYSSLAPVLSLEDNPPLSESQAIGVVAASQANFMRVIVPEEGSGSFHGVEILCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRGMIENVFQRSSEILDPPVANVDHLLVLFSLDQPKVEPFTLTRFLVEAESTGIPLTLALNKIELVDKETVDSWKARVRGWGYEPVLCSVESGYGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPRVSDAAEGENWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKALSTDKPAKCAFNNCLHVGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELNDDDDLIDEENDPVLRALRNENS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2295 470 Gene3D Probable gtpase engc; domain 3 334 396 - -
Apr10g2295 470 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 123 266 IPR004881 GO:0003924|GO:0005525
Apr10g2295 470 Pfam RsgA GTPase 146 332 IPR010914 GO:0003924|GO:0005525
Apr10g2295 470 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 150 330 IPR030378 GO:0005525
Apr10g2295 470 MobiDBLite consensus disorder prediction 416 441 - -
Apr10g2295 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 391 IPR027417 -
Apr10g2295 470 Gene3D - 74 146 IPR012340 -
Apr10g2295 470 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 68 452 IPR004881 GO:0003924|GO:0005525
Apr10g2295 470 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 68 452 - -
Apr10g2295 470 CDD YjeQ_EngC 159 389 IPR004881 GO:0003924|GO:0005525
Apr10g2295 470 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 79 395 IPR004881 GO:0003924|GO:0005525
Apr10g2295 470 ProSiteProfiles EngC GTPase domain profile. 159 328 IPR010914 GO:0003924|GO:0005525
Apr10g2295 470 Gene3D - 147 332 IPR027417 -
Apr10g2295 470 SUPERFAMILY Nucleic acid-binding proteins 79 149 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2295 K06949 - gmx:100796145 788.875