Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g2288 | ATGAAGCTGAGTCCCAGAGAGATCGAGAAACTAGGCCTGCACAATGCTGGTTATCTTGCCCAGAAACGTCTTGCTCGTGGTTTAAGACTCAATTATGCTGAAACTGTTGCTCTCATAGCAACTCAGATTTTGGAGTTTGTACGTGATGGTGAAAAGACTGTTGCAGAGCTAATGTGCATTGGTAGAGAGCTTTTGGGAAGGAGACAAGTTCTTCCAGCTGTTCCACATCTCTTAGAAACTGTTCAGGTTGAAGCCACCTTTCGTGATGGGACGAAGTTAGTCACCATTCATGACCCAATTGCTTGTGAGAATGGAAACCTTGAACATGCTTTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTCACTGAGAACGGAGAAGATCATAGAATTCCGGGGGAAATAATATTTGGAGATGGATGTCTGACTCTTAACCCTGGAAGGAAGGCAATAATTCTCACAGTTGTGAACAAAGGAGACAGGCCAATTCAGGTTGGCAGCCACTATCATTTTATAGAAGTAAATCCTTACTTAATCTTTGATAGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTTCTGGGACTGCCACACGTTTTGAGCCAGGGGAATGTAAAAGTGTTAAACTTGTAAGCATTGGAGGTAACAAAGTCATCAGAGGAGGTAACAACATTGCTGATGGTCCAGTTAGTGATTCCAACTGCATAGCAGCCATGGAGGCAGTGAGGACAAGGGGATTTGGACATGTGGAAGAGGAAAATGCTAGGGAAGGTGTTACTGGAGAAGACTGTTTATTTACTAAAGTAATTTCTAGAGAGGAATATGCTAATAAGTATGGACCTACTACTGGTGATAAAATCCGTCTTGGTGACACTGACTTATTTGCTGAAATTGAAAATGATTATGCTGTCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTCATAAGAGATGGAATGGATATTGGTATTAAAGATGGCCTCATTATCTCGATTGGAAAAGCGGGAAATCCAGATGTTATGGATAGAGTATTTACTAATATGATTATTGGTGCTAATACTGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTTCATTTTATATGCCCTCAATTAGTATATGAAGCTGTAACAAGTGGCATCACAACATTAGTGGGAGGAGGAACAGGACCTGCTGAGGGAACACGTGCAACAACTTGTACACCAGCCCCAGTTCAGATGAAACTGATGTTGCAATCAACAGATGACATGCCTCTAAACTTTGGTTTTACTGGAAAAGGGAATTGTGCCAAACCTGATGAACTGCATGAAATAATCAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGATCTACCCCAGCAGCAATAGACAGTTGCTTGACTGTTGCAGAACAACATGATATCCAGGTTAATATACATACTGACACCTTAAATGAATCTGGATTTGTGGAACATACAATTGATGCATTTAAAGGAAGAACCATTCATACTTACCACAGTGAAGGTGCAGGTGGTGGCCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAGAATGTCTTGCCCTCATCAACCAATTCCACACGCCCTTATACGTCTAATACCATAGATGAGCATCTTGACATGTTGATGGTATGCCATCATCTTGATAGGAATATTCCAGAAGATTTAGCTTTTGCAGCATCAAGGATCAGAGCTGAAACAATTGCTGCTGAAGATATTTTGCATGACATGGGTGCAATTAGCATTATATCTTCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATAAGCAGAACCTGGCAAACTGCCAACAAGATGAAGTTGCAAAGAGGACCACTGAAGCCTGGTGAAGTGAATGACAACTTTCGGATCAAACGTTATGTTGCGAAGTACACTATAAACCCGGCTATAGCAAATGGTTTTTCACAATATGTTGGTTCAGTCGAGGTGGGAAAGTTAGCTGATCTGGTATTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATGGGCTAACATGGGTGACCCCAATGCAAGCATCCCAACCCCTGAACCGGTGATCATGAGGCCTATGTTTGGAGCATTTGGCAAGGCTGGTAGTGCACACTCCATCACTTTTGTGAGCAAGGTTGCTTTGGATGGTGGGGTGAAAGCTTCTTACGAACTTAACAAGAGGGTGGAAGCAGTGGAGAGTGTGAGGAAGCTGAGCAAACTAGACATGAAACTCAATGACACACTTCCAAATATCACTGTGGACCCAGAAACATACATAGTTACAGCTGATGGAGAGGTTCTTACATGCACCGCAGCCACTACCGTTCCACTTTCTCGAAATTATTTCATCTTTTAA | 2424 | 0.4257 | MKLSPREIEKLGLHNAGYLAQKRLARGLRLNYAETVALIATQILEFVRDGEKTVAELMCIGRELLGRRQVLPAVPHLLETVQVEATFRDGTKLVTIHDPIACENGNLEHALFGSFLPVPSLDKFTENGEDHRIPGEIIFGDGCLTLNPGRKAIILTVVNKGDRPIQVGSHYHFIEVNPYLIFDRRKAYGMRLNIASGTATRFEPGECKSVKLVSIGGNKVIRGGNNIADGPVSDSNCIAAMEAVRTRGFGHVEEENAREGVTGEDCLFTKVISREEYANKYGPTTGDKIRLGDTDLFAEIENDYAVYGDECVFGGGKVIRDGMDIGIKDGLIISIGKAGNPDVMDRVFTNMIIGANTEVIAGEGLIVTAGAIDCHVHFICPQLVYEAVTSGITTLVGGGTGPAEGTRATTCTPAPVQMKLMLQSTDDMPLNFGFTGKGNCAKPDELHEIIRAGAMGLKLHEDWGSTPAAIDSCLTVAEQHDIQVNIHTDTLNESGFVEHTIDAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNSTRPYTSNTIDEHLDMLMVCHHLDRNIPEDLAFAASRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTANKMKLQRGPLKPGEVNDNFRIKRYVAKYTINPAIANGFSQYVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGEVAWANMGDPNASIPTPEPVIMRPMFGAFGKAGSAHSITFVSKVALDGGVKASYELNKRVEAVESVRKLSKLDMKLNDTLPNITVDPETYIVTADGEVLTCTAATTVPLSRNYFIF* | 808 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g2288 | 807 | PIRSF | Urease | 1 | 324 | IPR008221 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | PIRSF | Urease | 323 | 807 | IPR008221 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | PANTHER | UREASE | 324 | 807 | - | - | |
| Apr10g2288 | 807 | PANTHER | UREASE | 1 | 323 | - | - | |
| Apr10g2288 | 807 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 271 | 418 | IPR011059 | GO:0016810 | |
| Apr10g2288 | 807 | Pfam | Urease alpha-subunit, N-terminal domain | 324 | 360 | IPR011612 | - | |
| Apr10g2288 | 807 | Pfam | Urease alpha-subunit, N-terminal domain | 272 | 323 | IPR011612 | - | |
| Apr10g2288 | 807 | TIGRFAM | urease_alph: urease, alpha subunit | 324 | 807 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | ProSitePatterns | Urease nickel ligands signature. | 368 | 381 | IPR029754 | GO:0016151 | |
| Apr10g2288 | 807 | SUPERFAMILY | Metallo-dependent hydrolases | 370 | 807 | IPR032466 | - | |
| Apr10g2288 | 807 | Pfam | Amidohydrolase family | 366 | 690 | IPR006680 | GO:0016787 | |
| Apr10g2288 | 807 | ProSitePatterns | Urease active site. | 558 | 574 | IPR017950 | GO:0009039 | |
| Apr10g2288 | 807 | SUPERFAMILY | Urease, beta-subunit | 133 | 262 | IPR036461 | - | |
| Apr10g2288 | 807 | CDD | Urease_alpha | 272 | 806 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | Pfam | Urease subunit beta-alpha linker domain | 232 | 265 | IPR040881 | - | |
| Apr10g2288 | 807 | ProSiteProfiles | Urease domain profile. | 370 | 807 | IPR017951 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | CDD | Urease_gamma | 4 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Apr10g2288 | 807 | Pfam | Urease beta subunit | 134 | 230 | IPR002019 | GO:0035550|GO:0043419 | |
| Apr10g2288 | 807 | TIGRFAM | urease_gam: urease, gamma subunit | 1 | 102 | IPR002026 | GO:0016151|GO:0043419 | |
| Apr10g2288 | 807 | Pfam | Urease, gamma subunit | 1 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Apr10g2288 | 807 | Hamap | Urease subunit beta [ureB]. | 132 | 232 | IPR002019 | GO:0035550|GO:0043419 | |
| Apr10g2288 | 807 | Gene3D | Urease, beta subunit | 132 | 261 | IPR036461 | - | |
| Apr10g2288 | 807 | SUPERFAMILY | Urease, gamma-subunit | 1 | 104 | IPR036463 | GO:0016151|GO:0043419 | |
| Apr10g2288 | 807 | CDD | Urease_beta | 133 | 232 | IPR002019 | GO:0035550|GO:0043419 | |
| Apr10g2288 | 807 | Gene3D | - | 370 | 807 | - | - | |
| Apr10g2288 | 807 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 649 | 719 | IPR011059 | GO:0016810 | |
| Apr10g2288 | 807 | Gene3D | Urease, subunit C, domain 1 | 262 | 323 | IPR011059 | GO:0016810 | |
| Apr10g2288 | 807 | Hamap | Urease subunit alpha [ureC]. | 270 | 807 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | TIGRFAM | urease_beta: urease, beta subunit | 133 | 232 | IPR002019 | GO:0035550|GO:0043419 | |
| Apr10g2288 | 807 | Gene3D | - | 4 | 124 | IPR036463 | GO:0016151|GO:0043419 | |
| Apr10g2288 | 807 | PRINTS | Urea amidohydrolase (urease) protein signature | 536 | 553 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | PRINTS | Urea amidohydrolase (urease) protein signature | 575 | 591 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | PRINTS | Urea amidohydrolase (urease) protein signature | 641 | 656 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | PRINTS | Urea amidohydrolase (urease) protein signature | 667 | 680 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Apr10g2288 | 807 | Gene3D | Urease, subunit C, domain 1 | 324 | 720 | IPR011059 | GO:0016810 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g2288 | Apr-Chr10 | 34981235 | 34988737 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g2288 | K01427 | - | gmx:547672 | 1445.64 |