Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2272 ATGACGGAAACTGAAGGAAAGTGTGAGAAAATGGACAAACAGAAGAAAGGTGTAACTCTGCTAGCCTTCACCGGAGCTGCTGCAGTGCTCGCAATTGCCGCGAATCTTGCCATCACCGCTGTCAAGTACCACAAGGATAAAAATGTGAGGAAGAAGAAAGATCTTGCAGGTTCTAAGGTGCGTGTTAACCTATCTGCATCTGAGATTCTTAAGTTAGCAGATCAAATAATTGCTGAGTCAAACAAGGTCCATAATTCTGTTGCTTCCGTGCCTCTCGACAAGGTTACATATGCAAATGTTATATCACCTCTGGCAGAACTGCAATCACAGCAATTCCCTTTGATCCAATCTTGTGTGTTTCTGAAGCTGGTATCTACTCGTGGTGATGTACGTAAAGCAAGTGCAGAAGCAGAGCAAAGAATAGATGCTCATATTGATACCTGCAGAAAACGCGAAGATGTATATCTTGTTGTTAAAGCATTTGCAGTAAGGGGGGAGTGGATGAATGCTGAGGCCAAACGCTTTGTTCAAATTCTGGTTAGAGACTTTGAGCGAAATGGATTGAACCTCACAGCAAGCAAAAGAGAGGAGTTGGTGCGTCTGAGGGCTCAGATCGATGAATTAAGCTTTAGATATATTGAAAATCTCAATGATGAAAGCACATTTCTTCTCTTCAATGAGGCAGATTTAGCTGGATTACCTTCAGAGTTTCTCAAGGGTTTAAATAAATCTGAAAATGGGAAATTGAAAATTTCCCTGAGAAGTCATCATGTCACAGCTGTACTTGAATTTTGCAAGGTTGGAAATACAAGGCGAATGGTATCGGGGGCATATGGAAATCGATGTGGAGAAATCAATCTTTCTATTTTGGAAAGCCTGGTGCAACAACGACATAAATATGCTCGTTTACTTGGCTATTCATGCTATGCAGAGTATGCCATTGATGTTAGAATGGCAAAGACACCAAAAAAGGTGTTTGAGTTCTTGAAAGACATATCAACAAGTTTAACTGACTTGGCCACAAAAGAACTTGATATCTTGAGAGATTTGAAGAAGAAAGAGGAAGGGGAGTTTCCATTTGGAGTTGAGGATCTACTATATTATGCAAAGCGGGTTAAAGAGCAGGGTTATGATTTAGACTTTGAAGAGATCAAGCAATATTTACCAATTAGTTTAGTTCTATCTGGGATCTTCAAAATTGTCCAAGATTTATTTGGTTTAAGGTTTGAGGAAATTGCAGGAGCTGATGTTTGGCATGGTGATGTTCGTCTTTTTTCAGTGCTTGACTTAAGTTCTAGTGAACTCTTAGGTTATTGCTACCTTGATTTGTTCTCAAGGGAAGGAAAATATGGTCATACTTGTGTGTTGGCTCTCCAGAACAGTGCATTAACAATCAGTGGGGCACAGCAGATACCAGTTGCATTGCTAATATCTCAGTGTCAGAAGGATGCTGACAGTAGTTCTGGATTATTACGGTTTTCAGAAGTGGTCAGTCTTTTCCATGAGTTTGGTCATGTGGTTCAACAAATTTGCAACCGTGCATCATTTGCTAGAATTTCTGGATTATGTGTTGATCCTGACTTTGTGGAAATACCTGCTCAACTGCTAGAAAACTGGTGTTATGAAAGCTATTCTCTAAAGTTGATTTCTGGATTTCATCAGGATATTACAAAGCCCATAAAGGATGACATATGCAAATCAATTAAAAGATGGAGGACTTCCTTTTCTGCACTTAAATTGAAGCAAGAGATTCTATGCTGTCTTTTTGATCAAATCATACATTCTGCGGATAACATAGACATCCAGGAATTATTCAAGCATCTTCATCCCATGGAGATGTTGGGCTTGCCGATATTAGAAGGAACCAATCCAGCATCGTATTTTCCTTCTATTGTCATTGGTTATGAGGCAGCTTGCTACAGTCGTATATGGAGTGAGGTTTTTGCTGCTGATATATTTGCCTCAAAGTTTTGCAATGATGTCTCAAACCAGCATGCTGGCATACAGTTCAGAAACAAGGTATTGGCCCTGGCTGGAGCAAAGGATCCTATTGAAGTGTTATCTGACTTTCTAGGAAGAAAACCATCAATTCAAGCTTACGTTGAGACCAAATCTAAGTATGCTTTGTAA 2130 0.3972 MTETEGKCEKMDKQKKGVTLLAFTGAAAVLAIAANLAITAVKYHKDKNVRKKKDLAGSKVRVNLSASEILKLADQIIAESNKVHNSVASVPLDKVTYANVISPLAELQSQQFPLIQSCVFLKLVSTRGDVRKASAEAEQRIDAHIDTCRKREDVYLVVKAFAVRGEWMNAEAKRFVQILVRDFERNGLNLTASKREELVRLRAQIDELSFRYIENLNDESTFLLFNEADLAGLPSEFLKGLNKSENGKLKISLRSHHVTAVLEFCKVGNTRRMVSGAYGNRCGEINLSILESLVQQRHKYARLLGYSCYAEYAIDVRMAKTPKKVFEFLKDISTSLTDLATKELDILRDLKKKEEGEFPFGVEDLLYYAKRVKEQGYDLDFEEIKQYLPISLVLSGIFKIVQDLFGLRFEEIAGADVWHGDVRLFSVLDLSSSELLGYCYLDLFSREGKYGHTCVLALQNSALTISGAQQIPVALLISQCQKDADSSSGLLRFSEVVSLFHEFGHVVQQICNRASFARISGLCVDPDFVEIPAQLLENWCYESYSLKLISGFHQDITKPIKDDICKSIKRWRTSFSALKLKQEILCCLFDQIIHSADNIDIQELFKHLHPMEMLGLPILEGTNPASYFPSIVIGYEAACYSRIWSEVFAADIFASKFCNDVSNQHAGIQFRNKVLALAGAKDPIEVLSDFLGRKPSIQAYVETKSKYAL* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2272 709 CDD M3A_TOP 70 702 - -
Apr10g2272 709 Pfam Peptidase family M3 265 703 IPR001567 GO:0004222|GO:0006508
Apr10g2272 709 Gene3D Endopeptidase. Chain P; domain 1 39 185 IPR024080 -
Apr10g2272 709 Gene3D Collagenase (Catalytic Domain) 389 539 IPR024079 GO:0008237
Apr10g2272 709 Gene3D Neurolysin, domain 3 195 701 IPR024077 -
Apr10g2272 709 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 50 706 IPR045090 GO:0004222|GO:0006508
Apr10g2272 709 PANTHER SACCHAROLYSIN 50 706 - -
Apr10g2272 709 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 63 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2272 Apr-Chr10 34891692 34900615 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2272 K01392 - gmx:100793518 1227.62