Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2260 ATGGAATGCTGTATAATTGACAGGCTCAAGACTCAACCTTTATGGTTCTCTGTGCTTTTTGTTCTGGGATTGCTCACCATTCTGAGATTGGGTTTGGTTTTTCTGAGATGGGTCTATGTCAATTTTCTCAGGTCTCCCAAAAACCTTAAAAAGTATGGATCTTGGGCACTGGTTACTGGACCCACTGATGGCATTGGAAAAAGCTTTGCCTTTGAGCTCGCTCGCAAGGGGTTAAACCTCGCACTCGTTGGTCGGAACCCCGACAAGCTCAAAGACGTGTCCGATGCCATTGTCGCCAAGTTCGGAAAAACCCAGGTTAAAAACGTTGTCGTTGATTTCTCTGGGGATCTGGACTTGGGTGTGGCGAAGATTGGCGAAGCAATCGAGGGGTTGGACATTGGGGTGTTGGTTAACAATGTTGGAATCTCGTACCCTTATGCGAGGTTCTTCCATGAAGTTGATGAGGAGCTTCTCAAGAATCTGATTAAGGTCAACATCGTGGGAACTACAAAGGTGACACAAGCTGTTCTGCCTGGAATGCTAAAGAGAAAGAAGGGAGCAATTGTTAACATTGGCTCTGGAGCTGCTATTGTGATTCCTTCTGATCCCCTTTATGCTGTTTATGCCGCCACCAAAGCGTACATCGATCAATTTTCCAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGATGTTCAGTGTCAGGTTCCATTATATGTGGCAACAAAGATGGCATCAATCAGGAAGTCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCAGGTATGCGATGGATCGGCTATGAACCTCGTTGCACACCATACTGGCCACACACTATTCTTTGGGCCCTGGCATCCTTATTGCCAGAGTGTGTTGTTGATGCTTGGCGCCTGTGGTTTTGCTTGGGCATTCGAAAGAGAGGACAGCGCAAAGAGGCCATGAAGAAGGAGTAA 963 0.4621 MECCIIDRLKTQPLWFSVLFVLGLLTILRLGLVFLRWVYVNFLRSPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLALVGRNPDKLKDVSDAIVAKFGKTQVKNVVVDFSGDLDLGVAKIGEAIEGLDIGVLVNNVGISYPYARFFHEVDEELLKNLIKVNIVGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGMRWIGYEPRCTPYWPHTILWALASLLPECVVDAWRLWFCLGIRKRGQRKEAMKKE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2260 320 Gene3D - 49 266 - -
Apr10g2260 320 PIRSF 11-beta-HSD1 4 314 - -
Apr10g2260 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Apr10g2260 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Apr10g2260 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Apr10g2260 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Apr10g2260 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Apr10g2260 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Apr10g2260 320 PANTHER RH59310P 4 319 - -
Apr10g2260 320 CDD 17beta-HSD1_like_SDR_c 53 293 - -
Apr10g2260 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 311 IPR036291 -
Apr10g2260 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Apr10g2260 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Apr10g2260 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Apr10g2260 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 4 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2260 Apr-Chr10 34816635 34819660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2260 1 320 Lipid Metabolism Gene Families AT1G67730 64.062 6.51e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2260 K10251 - gmx:100817128 572.392