Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2253 ATGGCGTTGGCTTTCGACGAGTTCGGAAGGCCTTTCATAATCCTAAAGGAACAAGAACAGAAGAGCAGACTCAGAGGTCTCGATGCTCAGAAAGCCAACATCTCCGCCGGCAAAGCTGTCGCTCGCATTCTCCGAACCTCTCTCGGCCCCAAAGGCATGGACAAGATGCTTCAGAGTCCCGACGGCGACGTTACCATCACGAACGATGGTGCCACAATTTTGGAGCAGATGGACGTTGACAACCAAATTGCGAAGCTCATGGTTGAGCTTTCGAGGAGTCAGGATTACGAAATCGGTGATGGCACCACTGGTGTTGTTGTCATGGCTGGAGCACTTCTTGAACAAGCTGAACGACTCCTTGAACGAGGGATTCACCCTATTAGGATCGCTGAGGGTTACGAAATGGCTTCTAGAATCGCTTTTGAACATATCGAGCGTATTGCTAACAAATTTGAATTTGGACAAACCAATTTGGAGCCTCTAGTTCAAACTTGCATGACTACGCTCTCTTCCAAAATTGTGAATCGGTGTAAGCGAAGTTTGGCGGAGATTGCTGTTAAGGCTGTTCTTGCTGTTGCTGATCTGGAGAGGAAGGATGTTAATTTGGATCTGATAAAAGTGGAAGGGAAAGTTGGGGGTAAATTGGAAGATACCGAGTTAATCTATGGAATCGTTGTTGATAAGGATATGAGCCATCCTCAAATGCCTAAGCAAATTGAAAATGCTAAAATTGCTATCTTGACTTGCCCCTTTGAGCCCCCGAAGCCAAAGACTAAGCATAAGGTTGATATTGATACAGTGGAGAAGTTCCAGACATTGAGGTTGCAGGAACAGAAATATTTTGATGATATGGTTCAACGATGCAAGGATGTGGGTGCAACCCTTGTCATCTGCCAATGGGGTTTTGACGATGAAGCAAATCATCTCTTGATGCACAGGAACTTGCCAGCTGTTAGATGGGTTGGTGGTGTAGAGTTGGAGTTGATAGCTATAGCAACGGGTGGAAGAATTGTTCCTAGGTTCCAGGAGTTAACTCCAGAAAAGTTGGGTGAGGCTGGTATGGTACGAGAAAAGTCCTTTGGTACAACGAAAGACCGAATGCTGTACATTGAGCATTGTGCAAACTCAAGAGCTGTAACAATATTTATTCGTGGAGGTAACAAAATGATCATAGAGGAGACAAAGCGTAGCCTTCATGATGCCTTGTGTGTGGCTAGGAATCTTATCCGCAACAATTCTATTGTATATGGTGGTGGTTCAGCTGAGATTTCCTGTTCTATAGCTGTGGAGGCAGCTGCTGATAGATACCCTGGAGTAGAACAGTATGCTATTAGAGCATTTGGGGATGCTTTGGAGGCCATCCCTATGGCCCTTGCTGAAAATAGTGGCCTCCAACCTATTGAAACGTTATCTGCTGTTAAGTCCCAGCAAATAAAGGATAATAACCCTCACTTCGGCATTGATTGCAATGATGTTGGAACTAATGACATGTGTGAACAAAATGTATTCGAAACTTTGATCGGAAAGCAGCAACAGATCTTACTCGCTACCCAAGTTGTCAAGATGATACTGAAAATTGATGATGTCATATCCCCATCCGATTATTGA 1608 0.4453 MALAFDEFGRPFIILKEQEQKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRIAEGYEMASRIAFEHIERIANKFEFGQTNLEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQRCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGEAGMVREKSFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSLHDALCVARNLIRNNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFGDALEAIPMALAENSGLQPIETLSAVKSQQIKDNNPHFGIDCNDVGTNDMCEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSDY* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2253 535 Pfam TCP-1/cpn60 chaperonin family 40 531 IPR002423 GO:0005524
Apr10g2253 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Apr10g2253 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Apr10g2253 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Apr10g2253 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Apr10g2253 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Apr10g2253 535 SUPERFAMILY GroEL-intermediate domain like 156 412 IPR027410 -
Apr10g2253 535 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Apr10g2253 535 Gene3D - 150 412 IPR027410 -
Apr10g2253 535 PANTHER BNAA08G19100D PROTEIN 5 532 - -
Apr10g2253 535 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
Apr10g2253 535 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Apr10g2253 535 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Apr10g2253 535 Gene3D - 37 530 IPR027413 -
Apr10g2253 535 PANTHER CHAPERONIN 5 532 IPR017998 GO:0140662
Apr10g2253 535 Gene3D GroEL 222 376 IPR027409 -
Apr10g2253 535 CDD TCP1_epsilon 6 531 IPR012718 GO:0005524|GO:0006457|GO:0051082
Apr10g2253 535 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Apr10g2253 535 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 3 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2253 Apr-Chr10 34774333 34777914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2253 178 441 EF-hand Containing Proteins AT3G14270 22.183 8.16e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2253 K09497 - gmx:100817323 1018.45