Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2252 ATGAATCCACTCTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCGGACTAACCCTGTGGTGGCGAAATCGCCGGCGCAGTGTCAGTTAGGGCTTGATTCGTCTGTGAGAACAGTGAACTGCGGTTCTAAATCGAGCCTCTCTACTCAGGCCTCGTCGCTTGTTACGGATTCCGTTAAATCCTCTGTTGCTGGTTTGAATCACGAGGAGGAGGAGGAGCCGCGAGATTCCAAAGTGTTCGCCGGCGGAAATGGCGGCGGCGTCGCCGGCAGTGTGGCTGGGATCTTGTATAAGTGGGTGAATTACGGGAAGGGTTGGAGGTCCAGGTGGTTTGTGCTGGAGGATGGCGTGCTTTCGTATTACAAGATTCATGGACCGGACAAGATCCTGATGAGTCCAGCTAGGGATTGGAGTGTGAGGGTGATCGGCGAAGAATCATCGAAGTATGTGAAGAAGGCGAATTGGAACCTCAATCGAGTCTCTGCTGGAGGAGGAGGTAACAACAACACAAAGCAATGCAAGCCCTTCGGTGAGATACATTTGAAGGTTTCTTCAGTTCGTTCCAGCAAGTCTGATGATAAGCGGCTTTCCATATTTACTGGGACAAAAACGCTTCACTTGCGGTGTGTATCTAGAGAAGACAGAGCAATGTGGATTGAGGCCTTGCAGTCTGCAAAAGATCTTTTTCCTAGAACTCTAACAAGTAGCGATCTTGCTACTTCAGAAGATATTGTAGTTTCAACAGAGAAGCTGCGATCACGGTTGTCACAGGAAGGCATAAGTGAAGCAATAATTAATGACTGTGAGTCTATTATGCTTTCTGAAGTCTCTTATCTTCAGGGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACTAGCAGATAATGAAAGTCAAGAGGGAGCAGATGTTGAAACAGATGATGAAGATAGAACGTACTTTGACACAAATGAGTTTTTGTATTCCGATGCATTAAGAAGTGCTTCCTATCGAAGTAGGGAAGGTATGAGCAATGCCAGTATATATGATAAAGATTATATTCTTTATGATGGTTTGCATGGGTTTGAGAAGGAGATCAAAGATGTAAGTTATCCTTATGTCAAAAGAAGGGATAACTTACCAGAGCCAAAAGAAAAAGAGAAACCAGTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAACGAACCACTCTCTTCATTGCAAAAGTGTTTTGAAGACCTAGAGTATTCATACCTGGTTGATAGAGCATTGGAGTGGGGAAAGCAGGGGAATGATTTGATGAGAATCCTAAATATTGCAGCTTTTGCTGTGTCTAGCTATGCGTCAACTGAAGGTCGACAGTGTAAACCTTTTAATCCTCTACTTGGGGAGACTTACGAAGCTGACTATCCAGATAAAGGACTTAGGTTTTTTTCTGAGAAGGTTAGTCATCATCCAATGATTGTTGCTTGTCACTGTGAGGGAAGAGGATGGAAGTTCTGGGCAGATTCTAATTTGAAAGGAAAATTCTGGGGCCGTTCAATCCAACTAGATCCTGTGGGTGTCCTCACACTACAGTTTGAGGATGGTGAAACATTTCAGTGGAGCAAGGTTACCACTTCCATATACAATATCATACTAGGTAAAATTTATTGTGACCACTATGGTACCATGCACATCAAGGGCAGCGGCAACTATTCTTGCAAACTGAAGTTCAAGGAGCAATCTATCATAGACAGAAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACCGGAGAGAAAGTAGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTACTATGTACTTGGGGATCCAACTATCAAGCCAAAAGGTTATGATCCGATGACAGAAGCTGCATTATTGTGGGAAAGAGACAACTATGTATCCAAGACAAGATACAACCTCTCTCCCTTTGCAATTTCCTTGAATGAAATATTACCCGGTTTAATAGAGAAGCTGCCCCCAACTGATTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAACGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACAGGCACGAAAGATGCAGGAAAGAGGATGGCAACCTAGATGGTTTAAGAAGGATGAGGATGGTTGTTACCGATATTTAGGTGGCTATTGGGAAGCAAGAGAAAGGAATAATTGGGATGGAATCCCTGATATATTTGGACAGAGTTGTGATTTACCTTCATGTTCGGAAGAGACGGTATAA 2367 0.4322 MNPLCCIAPVSIDRDRTNPVVAKSPAQCQLGLDSSVRTVNCGSKSSLSTQASSLVTDSVKSSVAGLNHEEEEEPRDSKVFAGGNGGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDWSVRVIGEESSKYVKKANWNLNRVSAGGGGNNNTKQCKPFGEIHLKVSSVRSSKSDDKRLSIFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRTLTSSDLATSEDIVVSTEKLRSRLSQEGISEAIINDCESIMLSEVSYLQGKLKFLQQKHVMLLDTLKQLETEKIELETTVVDETKELADNESQEGADVETDDEDRTYFDTNEFLYSDALRSASYRSREGMSNASIYDKDYILYDGLHGFEKEIKDVSYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALEWGKQGNDLMRILNIAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTIKPKGYDPMTEAALLWERDNYVSKTRYNLSPFAISLNEILPGLIEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWQPRWFKKDEDGCYRYLGGYWEARERNNWDGIPDIFGQSCDLPSCSEETV* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2252 788 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 319 778 - -
Apr10g2252 788 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 317 - -
Apr10g2252 788 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 319 778 IPR000648 GO:0008289
Apr10g2252 788 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 317 IPR000648 GO:0008289
Apr10g2252 788 SUPERFAMILY Oxysterol-binding protein-like 404 776 IPR037239 -
Apr10g2252 788 Gene3D - 89 229 IPR011993 -
Apr10g2252 788 Coils Coil 717 737 - -
Apr10g2252 788 Pfam Pleckstrin homology domain 94 224 - -
Apr10g2252 788 SMART PH_update 90 229 IPR001849 -
Apr10g2252 788 Pfam Oxysterol-binding protein 410 763 IPR000648 GO:0008289
Apr10g2252 788 Gene3D - 706 768 - -
Apr10g2252 788 MobiDBLite consensus disorder prediction 64 78 - -
Apr10g2252 788 Coils Coil 283 317 - -
Apr10g2252 788 ProSiteProfiles PH domain profile. 89 227 IPR001849 -
Apr10g2252 788 SUPERFAMILY PH domain-like 92 227 - -
Apr10g2252 788 MobiDBLite consensus disorder prediction 63 82 - -
Apr10g2252 788 Gene3D - 495 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2252 Apr-Chr10 34762326 34769845 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2252 K20456 - gmx:100817856 1470.29