Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2229 ATGCCCGCATTCTTGATGGGACTTGTTTTTACCAAATGGGCATGTGCATTCTTCTTATTTTGTTGTCTAAACACTTCTGGGGTATATTCAGTGGAGGGGTTACATGGAGATTCTAAAGTGAGAGGATTGAACTTAGGAGGGTGGCTCGTTATTGAAGGTTGGATCAAGCCTGCACTGTTTGATGGCATTGACAATGGAGACATGCTTGATGGGACAGAGGTGCAGTTTAAGTCCGTGACATTGCAGAAGTATGTATCAGCAGAGAATGGCGGAGGAATGAATGTGACAGTTAACAGGGATGTCTCATCTTCATGGGAAACCTTCAGGCTATGGAGAGTATCTGCATCAGAATTTCAATTCCGTACCTCCCAAGGCCAATTTCTTACTTGTGATGGTGAAGGCAGCTCTGTCTCTGCAACAGCAAAATCAGCTTCAACATCAGAGACCTATGAAATTGAGCGGAATGAGAAAAATAGGATTCACATCAAGATAAAGGATGGGGTGTACCTTCAGGCTACAACAGATGGTCAGCTTACAGCAGACTACCCAGGTGCACCAGGATGGGACGATAATTCTGGCACATTTGAAATGACGATTGTATCAAATAACTTGCATGGAGATTACCAGCTAGCAAATGGATATGGGCATAGTCAGGCAAAAGACGTTTTTAGGAGGCATAGAAATAGCTTTATCACCATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCGAGTCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTACTTGGGCACAAGACTATGATATAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCTCAAAATGGGATGGAACATAGTTCAAGCAGAGATGGATTTACGGGCTGGTCGACTTCTCCAGATTACATTTCAGAGTCATTAAATGTTATTGAATTTTTAGTTTCTAGATATGCAAGATCTTCTGCCTTGCTGGGAATTGAGCTTTTGAATGAACCATCAGCTTCCACAGTTCCATTAGATGTTTTAATTCCATATTACAAGCAGGGCTACCAAATTGTTCGAAAATACTCGTCGTCAGCTTATGTGATAATCTGCCAGAGAATTGGCATGGCAGATCCTTTGGAACTTTATCAAGCCAACATAGGATCTCACAACTTAGTTTTGGATTTGCATTTCTACAATCTCTTTGACACATTTTTTGTTAATATGAGCGTCGGTGATAACATTCAATACATATACAAAAGCCGCGAAGGTCAACTGCAGGCCTTGAACAATTCAAATGGCCCACTTGTTTTTATTGGAGAGTGGGTGAATGAGTGGAATGTGACAAGTGGATCCCAAAAAGATTATCAGGACTTTGGAAGAGCACAGTTAGATGTCTATAATGCAGCTTCCTTTGGATGGTCTTATTGGACTCTGAAAAATGATAGGGAGCACTGGGATTTTGAATGGAACATTAGGAACAACTATCTTCTATTAGGTAAATCACCCAGCAAATGGAACTTTAACATTCTAGAATTGTTAGGATTGGCATGCACCTGGTTTTTGCTTCCATTTTTGTGA 1614 0.4058 MPAFLMGLVFTKWACAFFLFCCLNTSGVYSVEGLHGDSKVRGLNLGGWLVIEGWIKPALFDGIDNGDMLDGTEVQFKSVTLQKYVSAENGGGMNVTVNRDVSSSWETFRLWRVSASEFQFRTSQGQFLTCDGEGSSVSATAKSASTSETYEIERNEKNRIHIKIKDGVYLQATTDGQLTADYPGAPGWDDNSGTFEMTIVSNNLHGDYQLANGYGHSQAKDVFRRHRNSFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPSPFIGGSLEALDNAFTWAQDYDIKCIIDLHAAPGSQNGMEHSSSRDGFTGWSTSPDYISESLNVIEFLVSRYARSSALLGIELLNEPSASTVPLDVLIPYYKQGYQIVRKYSSSAYVIICQRIGMADPLELYQANIGSHNLVLDLHFYNLFDTFFVNMSVGDNIQYIYKSREGQLQALNNSNGPLVFIGEWVNEWNVTSGSQKDYQDFGRAQLDVYNAASFGWSYWTLKNDREHWDFEWNIRNNYLLLGKSPSKWNFNILELLGLACTWFLLPFL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2229 537 PANTHER - 17 517 - -
Apr10g2229 537 ProSitePatterns Glycosyl hydrolases family 5 signature. 341 350 IPR018087 GO:0004553|GO:0005975
Apr10g2229 537 Gene3D Glycosidases 192 517 - -
Apr10g2229 537 PANTHER FASCIN 17 517 IPR010431 GO:0007015|GO:0051015
Apr10g2229 537 SUPERFAMILY (Trans)glycosidases 39 509 IPR017853 -
Apr10g2229 537 Pfam Cellulase (glycosyl hydrolase family 5) 231 493 IPR001547 GO:0004553|GO:0071704
Apr10g2229 537 Gene3D - 54 190 - -
Apr10g2229 537 Pfam Fascin domain 91 181 IPR022768 GO:0030674|GO:0051015
Apr10g2229 537 SUPERFAMILY Actin-crosslinking proteins 74 188 IPR008999 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2229 Apr-Chr10 34636692 34641194 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2229 - - gmx:100809472 976.081