Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2220 ATGGCATCTTCGGTGATTGAGGGTAAACACGAGCCCTCGGATTTGATCACAGAAAACGTGAATCTGACGGTTGCAAATCTCTCACTTTCCAGTGAGACATTTTTGAGAGGCGCAATTTCTCTCAAGGATAAGGTGGTGGAGGAGACTTGGAAACGGAGAGAAGTGGTTGACCCAACGGTGTACACCGGTCTGTTGGGCACCGCCTTCACTTGCTTGCGGTCTTACCAGGTAACCGGTTGCCGGAAGGACTTGCTATTATGCAGTGAGATCATTGACACGTGTGCCACTGTTGCCCGTGCCTCCCTCAGGCACGTGACATTTTTGTGCGGTAGAGGAGGCGTTTATGCTCTTGGAGCTGTCGTTGCTAATTATATGGGGGACCTTCGAAAGCGTCATATATTTCTGGATCTATTCATTGAGGTGGCAAAAGAAAGAGCTCTACCTGTAGGACCAGAAGAAGGTGGTTTTGGAATGTCATATGATCTTCTATATGGGCGTGCTGGATTCTTATGGGGTGCATTATTCGTAAACAAGTACTTGGGAGAAGATGCAGTGCCTAAAGAAATTCTGATGCCTATTATTGATGCTGTGTTGGCTGGGGGTAGAGCGGGAGCATCTGATATTAAAGAATGTCCATTGATGTATAGATGGCATGGAACAAGGTACTTGGGTGCTGCAAATGGCCTTGCTGGTATCCTACATGTGTTGCTCCATTTTGATCTTCCTATTGAGGATGCTGAAGATGTTAAGGGAACTTTGAGATACTTGATGAGTAAACGCTTCCCTCACAGTGGAAACTACCCTTCTAGCGAAGGGAATCCAAGGGATAAGTTAGTGCAGTGGAGTCATGGTGCAACTAGCATGGCCATCACATTGTCCAAAGCTGCACAGGTTTTTCCAGGTGACAGGGAGCTACGAGATGCGGCAATAGAAGCAGGGGAAGTTGTGTGGAAGAGTGGATTGGTGAAGAAGGTGGGACTTGCTGATGGGGTATCTGGTAACGCCTACGCCTTCCTCTCCCTCTATCGACTAACCAAGGAGAGCATATACGAACAGCGAGCAAAATGGTTCTCTTGCTTCTTATATGATAATGCAATTTCTCTGCCTTCTTCCAATGCCTATTCTCTTTTCCAAGGACTTGCTGGAACTGCATGCCTCTGGTTTGACCTTCTTGCACCTGACAACTCTCGTTTTCCAGGCTATGAACTATAG 1212 0.4703 MASSVIEGKHEPSDLITENVNLTVANLSLSSETFLRGAISLKDKVVEETWKRREVVDPTVYTGLLGTAFTCLRSYQVTGCRKDLLLCSEIIDTCATVARASLRHVTFLCGRGGVYALGAVVANYMGDLRKRHIFLDLFIEVAKERALPVGPEEGGFGMSYDLLYGRAGFLWGALFVNKYLGEDAVPKEILMPIIDAVLAGGRAGASDIKECPLMYRWHGTRYLGAANGLAGILHVLLHFDLPIEDAEDVKGTLRYLMSKRFPHSGNYPSSEGNPRDKLVQWSHGATSMAITLSKAAQVFPGDRELRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYRLTKESIYEQRAKWFSCFLYDNAISLPSSNAYSLFQGLAGTACLWFDLLAPDNSRFPGYEL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2220 403 Gene3D - 13 403 IPR012341 GO:0005975
Apr10g2220 403 PANTHER LANC-LIKE PROTEIN GCL1 14 403 - -
Apr10g2220 403 SUPERFAMILY LanC-like 39 403 - -
Apr10g2220 403 SMART LANC_like_2 54 403 IPR007822 -
Apr10g2220 403 Pfam Lanthionine synthetase C-like protein 55 403 IPR007822 -
Apr10g2220 403 CDD euk_LANCL 60 399 - -
Apr10g2220 403 PRINTS Eukaryotic LanC-like protein family signature 190 205 IPR020464 -
Apr10g2220 403 PRINTS Eukaryotic LanC-like protein family signature 258 273 IPR020464 -
Apr10g2220 403 PRINTS Eukaryotic LanC-like protein family signature 296 317 IPR020464 -
Apr10g2220 403 PRINTS Eukaryotic LanC-like protein family signature 341 359 IPR020464 -
Apr10g2220 403 PRINTS Eukaryotic LanC-like protein family signature 389 403 IPR020464 -
Apr10g2220 403 PRINTS LanC-like protein superfamily signature 57 75 IPR007822 -
Apr10g2220 403 PRINTS LanC-like protein superfamily signature 160 175 IPR007822 -
Apr10g2220 403 PRINTS LanC-like protein superfamily signature 222 238 IPR007822 -
Apr10g2220 403 PRINTS LanC-like protein superfamily signature 278 298 IPR007822 -
Apr10g2220 403 PRINTS LanC-like protein superfamily signature 325 338 IPR007822 -
Apr10g2220 403 PRINTS LanC-like protein superfamily signature 373 390 IPR007822 -
Apr10g2220 403 PANTHER LANC-LIKE PROTEIN 14 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2220 Apr-Chr10 34577555 34581935 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2220 - - aprc:113849930 813.913