Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2209 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAGGCTCTTGGCGACCAATTCCCCGAAGGAGAACGTTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCGTTATACTTCTGTGTTCCATTTCGTGAACAGTTGCTAGAGTATTATGGAAACAACAAAGGTGTAGCAGATGCAGAGGAAAATCTCTTGACTTGCTTAGCCGACTTATTTTCACAGATAAGTTCCCAAAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGATTGAAAAAGCAGAATGAACTCTTTCGAAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGGCTGCAAAAAATGATCAAGAGACATCTCCATCTTCTGAAAAGGCTGCCAATGGACCTAAAAATGGTCCAGCTAATGGTGCTAAAAAAGAGCCTTTAGTTACATGGGTGCACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGGTGCTTGCGATGTGAAACTGTAACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCAACTGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCTCAGAAGAGAATGAAGATTAAGAAACCACCCCACGTCTTGGTTATCCATCTTAAGCGGTTCAAGTACATTGAACAGCTGGGCCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCCCTAGAGCTGAAATTGAGCGATACAGCTGAAGATGAAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGTAGTGGGCCCAACCATGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGATGAAAATGTCGAGATGATAGACGAGTCAGCTGTTCAGACATTCTTTGGGTCATCGCAAGAATTTTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAATAGGAACTAG 1110 0.418 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKGVADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKNDQETSPSSEKAANGPKNGPANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAEDEDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEFSSNTDHGYILFYESIGSGNRN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2209 369 MobiDBLite consensus disorder prediction 137 151 - -
Apr10g2209 369 CDD Peptidase_C19G 24 361 - -
Apr10g2209 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Apr10g2209 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Apr10g2209 369 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Apr10g2209 369 Gene3D Cysteine proteinases 5 362 - -
Apr10g2209 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 367 - -
Apr10g2209 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Apr10g2209 369 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 367 - -
Apr10g2209 369 MobiDBLite consensus disorder prediction 135 161 - -
Apr10g2209 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2209 Apr-Chr10 34508158 34514672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2209 24 334 Miscellaneous Gene Families AT4G31670 26.646 1.22e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2209 K11842 - gmx:100787737 736.102