Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2201 ATGCCTTCCCCTCAGTTGTTGCCACTAACTCGGCATGGCCAGAGTTTTCTGGCTTCAAAGAGGAAAACTTTATTACTTGCATCTGGTATTTTAATTACTGGCGGAACAGCTGCATATATGCATTCAAGGTTTAAAGTTCATAAAAATGATTTATTTGGCCGCTGTAATGGGCACAACAATGATAAAGAAGTCACAAAGGAGGAGGTTGTGAAGAGTGATATTGCACCAAAAAATAAACAAAAGAAAGTGGGCTTGAAGTCACTCCAAGTCCTTGCTGCAATTCTTCTATCTGAGATGGGCAAATTGGGTGCAAGGGATCTTTTTGGTTTAGTCGCCATAGCGGTGCTACGAACAGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCATTGTTTCTTCGGCTAATTTCAGAAAATATTCTTTTGTGCTTCCTCTTATCAACCATCCATTCTACGTCAAAGTATATAACAGGGACTTTAAGTTTGCATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCATTATTTTGAGAACATGGTGTATTACAAAATATCTCATGTTGATGGTCGGATAACTAACCCAGAACAAAGACTTGCCAGTGATGTCCCAAGATTCTGTTCAGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCAGTTACCGATGGAATTCTATACACTTGGAGGCTATGTTCATATGCTAGTCCGAAATATGTCTTCTGGATATTGGCATATGTACTTGGAGCTGGGGCCGCAATCAGGAACTTCTCTCCTTCATTTGGGAAACTTATGTCCAGAGAACAGCAATTGGAGGGAGAATATCGACAGCTTCACTCACGGTTAAGGACTCACTCAGAAAGTATAGCATTTTATGGTGGAGAGAGGAAAGAAGAAGCACATATCCAACAGAAGTTTAAGACTTTGGTTAGGCACATGAGTAATGTGCTACATGATCATTGGTGGTTTGGCATGATCCAGGACTTATTATTGAAGTACCTTGGAGCTACTGTAGCAGTTATTTTGATTATTGAACCTTTTTTTTCGGGTCATCTAAGGCCTGACAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTACAAGACGACTCAATCGTCTCAGTGGGTACGCTGATCGCATTTATGAATTAATAGCTGTATCAAAGGAGCTAAACTTGGTGGATGAGAAATCTTCACTGCAAAGAAAAGGAAGCAGAAATTGCATTAGTGAAGCTAACTACATTGGATTTTATGATGTCAAGGTTGTTACTCCCACTGGTAATATCTTGGTGGATGATCTGACTCTTCGGGTTGAATCAGGATCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGAGTTCTAGGTGGTCTTTGGCCACTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTGCCACAAAGGCCATACACTGCTGTAGGAACACTTCGTGATCAGTTGATATATCCTCTTACTGCAGATCAAGAAGTTGAGCCACTAACAGATCGTGGGATGGTGGAGCTGTTGAAAAATGTTGATCTTGATTACCTGTTGGACCGTTACCCACCTGAAAAAGAGGTAAACTGGGGTGAGGAACTTTCGTTGGGTGAGCAACAGAGATTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTCGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTCCATGATGTGGTTTTATCTTTAGATGGTGAAGGAGGATGGACTGTTCAAAGGGAGGACTCTTCTACTGAAATGGGGATTGATACAATGAAGGCATCGGAAACAAAACGACAGAGTGATGCAAAGGCAGTGCAACAAGCATTTTCCATGAGCAAAAAGGATTCTGCATTCTCAAATCCAAAGGCACAGTCATACTTTGCAGAGGTGATATCATCAGCTCCATGTATGAATCATACAATTTCACCATCTGCTGTTTCCCAACTCCGTGGTAATACAAGGATATTGCCATTGAGAGTAGCTGCCATGTGCAAAGTACTGGTACCCACTGTACTTGATAAACAAGGTGCAAAACTGCTTGCTGTTGCTTTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGAATTGCATCGCTGAATGGTACCACTGTAAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATCCGGTTAGTTGGTTTAAGTGTTCTTCAAAGTGCTGCATCTTCTTTCATTGCACCTTCTATAAGGCATTTGACAGCCAGGCTGGCCCTCGGGTGGCGGATTCGTTTGACACAACATCTGCTAAAAAATTACTTGAGAAGCAATGCATTCTACAAGGTCTTCCACATGACAAGCAGAAATATTGATGCAGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCTGGACTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCCATACTCTATGCTTACATGTTACTTGGTCTGGGGTTCTTAAGAACAGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAGCAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTCTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAGCGCGAGAGAAAGCAGTGAGCATCCCATCTATGTTATATTTAATGTCTGGCTTTGTGCAGATGGTTGAATCAAGATTCAGAGAGCTTCTTTCCCACTCCAAGTACCTTTTGAGAAAGAAGTGGCTGTTCGGGATACTAGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTGTTATATGCTATGGAACATAAGGGAGACCGCGCTTCAATTAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCGCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAATTGCACAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAGCTCCTGGATGCAGCACAGTCTGGTACTTTATCTTTATTAGTTTTATATGCAAAAGATTATCATGCTAAAGATGCTATTTCCTTTTCTGAGGTTGATATTGTAACCCCTGCCCAGAAGATGTTGGCCAGGGAGTTGACATGTGACATTGAGCTTGGCAGAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGACTCTCTAGACCATCTGATGATATGGGTCAAGAGGCTGGATCAGATTGTGCCATCTTCTATGTTCCTCAGCGGTCCTATACATGCTTGGGAACATTGCGGGATCAAATTATATACCCACTGTCCCGTGAAGAAGCAGAGTTTAGAATATCGAAGATGTATGGAAAAGGTGAAAAACATCCTGACACTGGAAAAATGTTGGACACACATTTGCAAGTTATCCTGGAGAATGTTAGGTTGAATTATCTTCTAGAAAGGGACGAAAGTGGCTGGGATGCAAATCTAAACTGGGAAGACATTCTCTCTCTTGGGGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTTCCATAAGCCCAAATTTGGGATCCTGGACGAGTGTACCAATGCAACTAGTGTTGATGTCGAAGAACTCCTATATGGGCTTGCCAAAAAAATGGGGATCACAGTTGTTACTTCCTCCCAACGTCCTGCTTTAATACCATTCCATTCCATGGAATTGCGGCTAATTGATGGTGAGGGTAACTGGGAACTTCGTATGATCAAGCAATGA 4047 0.4166 MPSPQLLPLTRHGQSFLASKRKTLLLASGILITGGTAAYMHSRFKVHKNDLFGRCNGHNNDKEVTKEEVVKSDIAPKNKQKKVGLKSLQVLAAILLSEMGKLGARDLFGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRLASDVPRFCSELSEIVQDDLTAVTDGILYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAFYGGERKEEAHIQQKFKTLVRHMSNVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISTRRLNRLSGYADRIYELIAVSKELNLVDEKSSLQRKGSRNCISEANYIGFYDVKVVTPTGNILVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLTDRGMVELLKNVDLDYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWTVQREDSSTEMGIDTMKASETKRQSDAKAVQQAFSMSKKDSAFSNPKAQSYFAEVISSAPCMNHTISPSAVSQLRGNTRILPLRVAAMCKVLVPTVLDKQGAKLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLVGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRSNAFYKVFHMTSRNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLSTHAESVAFFGGGAREKAVSIPSMLYLMSGFVQMVESRFRELLSHSKYLLRKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQSGTLSLLVLYAKDYHAKDAISFSEVDIVTPAQKMLARELTCDIELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSDDMGQEAGSDCAIFYVPQRSYTCLGTLRDQIIYPLSREEAEFRISKMYGKGEKHPDTGKMLDTHLQVILENVRLNYLLERDESGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEELLYGLAKKMGITVVTSSQRPALIPFHSMELRLIDGEGNWELRMIKQ* 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2201 1348 Gene3D ABC transporter type 1, transmembrane domain 103 424 IPR036640 GO:0005524|GO:0016021
Apr10g2201 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1110 1346 IPR003439 GO:0005524
Apr10g2201 1348 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2201 1348 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 83 595 - -
Apr10g2201 1348 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 592 1348 - -
Apr10g2201 1348 CDD ABCD_peroxisomal_ALDP 1110 1341 - -
Apr10g2201 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 651 IPR027417 -
Apr10g2201 1348 Pfam ABC transporter 464 609 IPR003439 GO:0005524
Apr10g2201 1348 Pfam ABC transporter 1128 1294 IPR003439 GO:0005524
Apr10g2201 1348 Gene3D - 436 706 IPR027417 -
Apr10g2201 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1109 1338 IPR027417 -
Apr10g2201 1348 CDD ABCD_peroxisomal_ALDP 447 655 - -
Apr10g2201 1348 SMART AAA_5 472 651 IPR003593 -
Apr10g2201 1348 SMART AAA_5 1135 1336 IPR003593 -
Apr10g2201 1348 Gene3D - 1102 1339 IPR027417 -
Apr10g2201 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 676 IPR003439 GO:0005524
Apr10g2201 1348 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 83 595 - -
Apr10g2201 1348 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 592 1348 - -
Apr10g2201 1348 SUPERFAMILY ABC transporter transmembrane region 115 417 IPR036640 GO:0005524|GO:0016021
Apr10g2201 1348 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524
Apr10g2201 1348 Pfam ABC transporter transmembrane region 2 744 1024 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2201 1348 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr10g2201 1348 ProSitePatterns ABC transporters family signature. 1266 1280 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2201 Apr-Chr10 34462482 34475256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2201 64 665 Acyl Lipid Metabolism Gene Families AT4G39850 33.971 5.76e-104 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2201 K25819 - gmx:100813765 2402.48