Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2198 ATGGGGGATAATTCACCAGAGAAGAAACATGGTTGTGGCTTGATAACAGCAGTATTCTGGCGACCCAGTATGCGCTCACGCAAATCAGCCTCTGAAAGTTCTGCTGAACCCAACAATTTTGAAAAGCCATCAAACTGTCAAGATTCAAAACAACAACGTGGTGTCTACAATGATGACGCTTTAGTTGGAACAACTTCTTATGATGCTACCTTAAACTCTTCACGTCATTGTGTCTCTAATCCTCAAAAGCCAATCCATGCTGTAAACCAAAGGAAACACCACCATCAACAACATCCTAACGAAACAACGATGGCAAGAGGCCCTTCATCAAAGGTTTCACCTACTCAAGGCTATGTTAACCAGGGAAGAAGGGTGCCCAAAGAAGCTATTGGCATTTCAGGAGAACTTGAAAGCATGATCAATGATCACCAAAAGTCCAAAGGAAACAGTACCCTTGTTCGAGCTTCTTCTAGCAATGTGATGTTGTTTGGTAATTTAGGTAACCTTAGACAAGGAGGAACAGGACCAGATTCTCACAATGCAATGGATTACTACGTTGGGGGTAACAAAGGATACACAAACCCTATGATGGGACATGAAGGAGGTTATAGTAGTAAAGAGGCTAAACCAAGCAAGGAACAATCTGGTTCATTATGCAGGGCTGTGTCTACTAGAATGGATCCTGAGAAATTGAAGATATTGGGTAATGAAGATTATAAAAATGGACGGTTTGCAGAGGCTTTGGCACTTTATGATGCAGCCATTGCAATTGACCCAAATAAGGCTTCTTATAGGAGTAACAGAAGTGCAGCATTAACTGCTCTTGGAAGGCTTTTAGAAGCCGTTTTTGAATGCAGAGAAGCCATTAAGATTGATTCTCATTACCAGAGAGCTCATAATCGTTTGGGAAATTTGCATTTTAGATTAGGAGAAACGGATAATGCCCTATATCATTATAAACAAGCAGGACCAGAGGCTGATCCTGATGAGATTGCTAAAGTGAAGATTCTTCAAGTACATCTAAACAAATGCACAGAGGCACGTAGATTGGGGGATTGGAACACATTAATAATTGAGACCAACAATGCTATATCATCTGGTGCAGATTCTGCTCCACAAATATACGCATTGCAAGCTGAAGCCCTCCTAAAGCTCCGTAGACATCAAGATGCAGATAAAATAATGTCGAAGTGTTCTAATTTTGATGTTGATGAGTGTACCAAGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTTACACGTGCTCAGGTTGATATAGCTGCTGGCAGATTTGAAGTTGCTTTAGAGGCAGCACAAAAAGCAGTGAAGTTGGACTCTAATAACAAGCAAGCTAGCAAAGTGATGATAAAGGTTCGATCTATAGCAAGTGCGCGAGCAAAGGGAAATGAGCTTTTCAAGGCATCAAAATTCTCCGAGGCTTGTGTTGCTTATGGAGAAGGCCTTGATCATGACCCATATAACTCAGTTTTATTGTGCAATAGAGCTGCTTGCAGATCAAGATTAGGCCAATTTGAGAAAGCAGTGGATGATTGCACTGCTGCCCTTAATTTACGACCATCTTACAACAAGGCCAGGTTACGAAGAGCAGATTGTAATGTTAAGTTGGAAAGATGGGAAGCTTCAATACACGACTACGAAATCTTGCTAAAAGAGATGCCAGACGAAGAAGTAAAACGAGCATTAATGGAGGCCCAAGCACAACTTAAGAAACAATGA 1740 0.4109 MGDNSPEKKHGCGLITAVFWRPSMRSRKSASESSAEPNNFEKPSNCQDSKQQRGVYNDDALVGTTSYDATLNSSRHCVSNPQKPIHAVNQRKHHHQQHPNETTMARGPSSKVSPTQGYVNQGRRVPKEAIGISGELESMINDHQKSKGNSTLVRASSSNVMLFGNLGNLRQGGTGPDSHNAMDYYVGGNKGYTNPMMGHEGGYSSKEAKPSKEQSGSLCRAVSTRMDPEKLKILGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIKIDSHYQRAHNRLGNLHFRLGETDNALYHYKQAGPEADPDEIAKVKILQVHLNKCTEARRLGDWNTLIIETNNAISSGADSAPQIYALQAEALLKLRRHQDADKIMSKCSNFDVDECTKFFGPIGNANLLVTRAQVDIAAGRFEVALEAAQKAVKLDSNNKQASKVMIKVRSIASARAKGNELFKASKFSEACVAYGEGLDHDPYNSVLLCNRAACRSRLGQFEKAVDDCTAALNLRPSYNKARLRRADCNVKLERWEASIHDYEILLKEMPDEEVKRALMEAQAQLKKQ* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2198 579 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 579 IPR044534 -
Apr10g2198 579 SMART tpr_5 462 495 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 228 261 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 262 295 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 416 449 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 530 563 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 372 405 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 296 329 IPR019734 GO:0005515
Apr10g2198 579 SMART tpr_5 496 529 IPR019734 GO:0005515
Apr10g2198 579 MobiDBLite consensus disorder prediction 89 118 - -
Apr10g2198 579 MobiDBLite consensus disorder prediction 197 220 - -
Apr10g2198 579 MobiDBLite consensus disorder prediction 101 118 - -
Apr10g2198 579 MobiDBLite consensus disorder prediction 26 52 - -
Apr10g2198 579 PANTHER OS01G0616333 PROTEIN 5 579 - -
Apr10g2198 579 SUPERFAMILY TPR-like 466 577 IPR011990 GO:0005515
Apr10g2198 579 MobiDBLite consensus disorder prediction 20 52 - -
Apr10g2198 579 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Apr10g2198 579 Gene3D Tetratricopeptide repeat domain 226 579 IPR011990 GO:0005515
Apr10g2198 579 Pfam TPR repeat 235 276 - -
Apr10g2198 579 SUPERFAMILY TPR-like 228 451 IPR011990 GO:0005515
Apr10g2198 579 ProSiteProfiles TPR repeat profile. 416 449 IPR019734 GO:0005515
Apr10g2198 579 Pfam Tetratricopeptide repeat 499 528 IPR019734 GO:0005515
Apr10g2198 579 Pfam Tetratricopeptide repeat 298 328 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2198 Apr-Chr10 34428049 34430344 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2198 - - gmx:100811282 823.928