Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2182 ATGTCGTCGAAATATCAGATTCTTGACAACCGGCCCATTCATCAGTGGAAGGTTACGGAGCTGAAAGAGGAGCTAAAGAGAAGGAAGCTAAGTATTAAAGGTTTGAAGGATGATTTGGTCAAGCGATTGGACGAAGCTGTTCGTCTTGAAAGGGAGGCTGCTGAGGCTTCCGAGAAGGATGAGGCCAATGGGTTTGAAGGTCATGTAGATGATGGGGCAAAAGATTCAGAGAAAGTTACTGTGAATGCTGAAGTGGTTGGTACAATTGATGGGCAAGGTGTGAAATCTTTTGAAACTGCTGGAAAGGGGAATAGTGGTGTAGCTGAACCAATTGAAACAGAAAACACAGGAAAGACTTCGGATGTTGTGGATAATGACGGCAGTAAGATTGACAAGCAGGATGGTGCTGCCGTCCAAGTTGACATTAATAATAGTTTGTCTGCTGTGGATCAAGAAGTTGAACATACGGGCTTGCCAGCCAGTGTTGATTCTACAAATGTGGGAGAGGAGGCAATTGCTCATGCTTCTACCATGGAGACCACCATTACAGTCACTGAGAAGGTACTAACAGAAGTAGTAGTCAGTGGTCAGGATTCTTCTAGTGCAGAAAAGAATAATGAGGATTCAGCAGCAAAGCTGGAGAATGTAGAGTCAAAGGTGCAGGTGGATAATGAGGACACAAAGCCCCAACTGGATTGTGAGATAAAGCCCCTGTGCGAGGATCTTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATATGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCAGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTATTGAAGAAAATAACAATAATGTTTCAAGTCCAGACTTGAACAAGACCAATAGCAGTGATGATGTGTGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATCAACTTAGAGACAAAGTGGAGGGTATTGAAGAGCCTATTGTGAAGGAGGAAAGCAGTACTATAGTTGTGGGAGATGGTGGATATGCAGGAAGAAGTCATACCCACCAAGATCTTGACATGAGTCCTGCTGCCATGACTGCTGAGAAACGAAAATTTCATGAACAAGGATCAGTTGGGAACAATGAGCCTGCCAAAAGGCAACGCAGGTGGAACATTGAAACAGTTAAAGGTTCAGATCCACAAAGCACTACTCCCAGGCCTGCTAATACACCCAAGGATGAGCCAGTTGCTCTGAAACGCAACTTCTCTAGGTCTGATTCCTTTGCAACCGATGATGCACCTAAAGAACGTATTGTTCCATCGTCACAAAGGTCCCCCACTAATTCCCTCAGGATTGATCGTTTCCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCAACAATTTCTGGATGGACCAAATAAAGACTCATTGCTATGTCACTTACTCATCCATTGAAGAAGCCATTGAGACAAGAAATGCTGTGTATAATTTGCAATGGCCGCCAAATGGTGGGCGTCTCTTAGTTGCTGAGTTTGTTGACCCTGAAGAAGTGAAACTGAAATTAGAAGCTCCTCCCACTCAGGCTGCCTCTGTCAGCAATGTTCCAACAGTTCCTCCCACACCACCCTCCTCACAGCCAGAGCCTTCCCCCCGTCCACACAAGGAGCAGCATCCAGTTCCAGCTACTCTCCCACCTCCACCACCATTGTCAAAACCCCCACCACTTGCAAGAGACCGGCTTCCATCCCCACCGCCACTTCCTGAAAAAGTTGACCCACCTATTGTCACTCTGGATGATCTTTTCCGCAAAACCACGGCAACTCCTCGGATCTACTATTTACCTTTGTCTGAAGAGCAAGTTGCGGCTAAACTGGCGGCACAGGGTAAAAGCACGAGGCAGTAG 2133 0.4454 MSSKYQILDNRPIHQWKVTELKEELKRRKLSIKGLKDDLVKRLDEAVRLEREAAEASEKDEANGFEGHVDDGAKDSEKVTVNAEVVGTIDGQGVKSFETAGKGNSGVAEPIETENTGKTSDVVDNDGSKIDKQDGAAVQVDINNSLSAVDQEVEHTGLPASVDSTNVGEEAIAHASTMETTITVTEKVLTEVVVSGQDSSSAEKNNEDSAAKLENVESKVQVDNEDTKPQLDCEIKPLCEDLVPDSSVPENQVSEVNPSLGSQVKYDSISTDSVSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVYDESHSMDVGGLHEKKASIEENNNNVSSPDLNKTNSSDDVWYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDQLRDKVEGIEEPIVKEESSTIVVGDGGYAGRSHTHQDLDMSPAAMTAEKRKFHEQGSVGNNEPAKRQRRWNIETVKGSDPQSTTPRPANTPKDEPVALKRNFSRSDSFATDDAPKERIVPSSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVNNFWMDQIKTHCYVTYSSIEEAIETRNAVYNLQWPPNGGRLLVAEFVDPEEVKLKLEAPPTQAASVSNVPTVPPTPPSSQPEPSPRPHKEQHPVPATLPPPPPLSKPPPLARDRLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSTRQ* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2182 710 MobiDBLite consensus disorder prediction 109 123 - -
Apr10g2182 710 CDD RRM_ACINU 515 599 IPR034257 -
Apr10g2182 710 MobiDBLite consensus disorder prediction 334 380 - -
Apr10g2182 710 Coils Coil 18 59 - -
Apr10g2182 710 Coils Coil 199 219 - -
Apr10g2182 710 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 708 - -
Apr10g2182 710 Pfam RNSP1-SAP18 binding (RSB) motif 666 706 IPR032552 -
Apr10g2182 710 MobiDBLite consensus disorder prediction 357 380 - -
Apr10g2182 710 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Apr10g2182 710 Pfam SAP domain 15 46 IPR003034 -
Apr10g2182 710 SUPERFAMILY SAP domain 13 50 IPR036361 -
Apr10g2182 710 MobiDBLite consensus disorder prediction 437 515 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 335 355 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 100 130 - -
Apr10g2182 710 Gene3D SAP domain 13 61 IPR036361 -
Apr10g2182 710 MobiDBLite consensus disorder prediction 612 668 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 51 77 - -
Apr10g2182 710 SMART sap_9 13 47 IPR003034 -
Apr10g2182 710 MobiDBLite consensus disorder prediction 485 501 - -
Apr10g2182 710 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 708 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 599 673 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 196 215 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 462 477 - -
Apr10g2182 710 MobiDBLite consensus disorder prediction 299 320 - -
Apr10g2182 710 SUPERFAMILY RNA-binding domain, RBD 510 596 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2182 Apr-Chr10 34294079 34298360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2182 K12875 - gmx:100786288 1095.11