Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2181 ATGGAGAACCACCATTGCGACGATGATTACAATGAGCGCGTGCAATCGAAACCCGTGGTTCTCATCACAGGATGCTCTTCAGGAGGAATAGGCGACGCGCTTGCACGCGCCTTCGCAGCGAACAAGTGCCAGGTGGTGGCCACCAGCAGGTCGCGGCGGAGCATGGCGGAGCTGGAACACGACCACAGAGTCTTCTTGCAAGAGTTGGATGTTCAGTCTGATGAGAGCGTGCGCAGACTGGTCGATGCCGTTGTAGACAAATACGGTCACATCGACGTTCTCGTCAATAACGCCGGCGTTCAGTGCGTTGGTCCACTCGCCGAACTTCCTCTCTCTGCAATCCAAGACACCTTCGACACCAATGTCTTCGGTTCCTTGAGAATGGTTCAGGCTGTTGCTCCTCACATGGCATCTCGGAAGCAAGGAAAGATTGTCAACATTGGTAGTGTTTCTGCCTTGGCCTCTGGACCTTGGTCAGGAGCTTACACTGCTTCTAAAGCTGCTATTCATGCTTTGACAGATACATTAAGATTGGAATTAGGACATTTTGGAATTGATGTTGTGAATGTCGTCCCTGGAGCTATCAAGTCAAATATTGGAAATTCTGCCATAGCCAGCTACAAGCGCATGCCTGAATGGAACTTGTTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTATTTTTCTCAGAGGTCCAAATCCACCCCTACAGACGAGTTTGCTAAAAACACTGTAGCTGCGGTCCTTAAGAAGAATCCACCTGCATGGTTCACCTATGGCCATTACTCTACCATCATGGCTATCATGTACCATTTACCACTCTCTGTTAGGGACTTTCTTTTGAAGAAAGCAATGAAATGCTGA 867 0.4902 MENHHCDDDYNERVQSKPVVLITGCSSGGIGDALARAFAANKCQVVATSRSRRSMAELEHDHRVFLQELDVQSDESVRRLVDAVVDKYGHIDVLVNNAGVQCVGPLAELPLSAIQDTFDTNVFGSLRMVQAVAPHMASRKQGKIVNIGSVSALASGPWSGAYTASKAAIHALTDTLRLELGHFGIDVVNVVPGAIKSNIGNSAIASYKRMPEWNLFKPFEAAIRDRAYFSQRSKSTPTDEFAKNTVAAVLKKNPPAWFTYGHYSTIMAIMYHLPLSVRDFLLKKAMKC* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2181 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Apr10g2181 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 IPR002347 -
Apr10g2181 288 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 IPR002347 -
Apr10g2181 288 PANTHER BNAC02G00550D PROTEIN 12 286 - -
Apr10g2181 288 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 18 198 - -
Apr10g2181 288 CDD 17beta-HSD-like_SDR_c 19 264 - -
Apr10g2181 288 Pfam short chain dehydrogenase 19 202 IPR002347 -
Apr10g2181 288 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 12 286 - -
Apr10g2181 288 Gene3D - 17 274 - -
Apr10g2181 288 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 277 IPR036291 -
Apr10g2181 288 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 149 177 IPR020904 GO:0016491
Apr10g2181 288 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Apr10g2181 288 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Apr10g2181 288 PRINTS Glucose/ribitol dehydrogenase family signature 136 152 IPR002347 -
Apr10g2181 288 PRINTS Glucose/ribitol dehydrogenase family signature 162 181 IPR002347 -
Apr10g2181 288 PRINTS Glucose/ribitol dehydrogenase family signature 183 200 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2181 Apr-Chr10 34290526 34294415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2181 19 199 Acyl Lipid Metabolism Gene Families AT1G62610 31.959 1.92e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2181 - - gmx:100789660 483.796