Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2171 ATGTTGTGCCTCAACACTGCTTTCAGCTTTATCTTACCCAAAACATCAAGTTCAGTTTTTTCCTTCAAGTCAAGGACCCCAATATCCTGCACCCTTCCAGGAACAGTTGCTGAACCAAAATCAACGGCCACTACTGAACCACTCTTGCTTAATGCAGTTCGTGGATTAGATGTTGAAAGACCCCCTGTTTGGCTCATGAGGCAAGCAGGGAGATACATGAAGACTTACCAAATCATCTGTGAGAAATATCCTTCATTCCGTGAAAGATCTGAAAATGTTGATCTTGTGGTGGAAATATCATTGCAACCTTGGAATGTTTTCAAGCCAGATGGTGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGCAAGGGTCCTGTCATATTTGACCCTATTCACACAGCTGCCCAGGTTGACCAAGTGAGGGAGTTCAATCCTGAAGAGTCAGTTCCATACGTTGGTGAAGCACTAACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGGGCTCCATTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAACACTTCTCAAAAATAAAGAGATTGGCTTTCTCTGAATCCAAGATCCTCCACTCATTACTGCAGAAGTTTACAACCTCAATGGCAAGATACATTCAATACCAAGCTGACAATGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACAGAGCTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCATACTTGAAGCAAATTATTGATACTGTGAAGAAAACACATCCAAAACTCCCTTTGATCCTCTATGCAAGTGGGTCTGGGGGCTTGCTAGAGAGACTAGCTTTGACAGGTGTGGATGTAGTTAGCTTGGATTGGACAGTTGATATGGCTGATGGTAGGAGGCGATTGGGACCAAATATAGCTGTGCAGGGTAATGTGGACCCTGGTGTTCTTTTTGGTTCAAAAGATTTCATCACTGATCGGATAAATGATACTGTAAGAAAAGCAGGTAGAGGGAAACATATCTTGAATCTTGGTCATGGCATTAAAGTAGGTACGCCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCCAAAGCAATCCAATACTAA 1164 0.421 MLCLNTAFSFILPKTSSSVFSFKSRTPISCTLPGTVAEPKSTATTEPLLLNAVRGLDVERPPVWLMRQAGRYMKTYQIICEKYPSFRERSENVDLVVEISLQPWNVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTAAQVDQVREFNPEESVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKTHPKLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKDFITDRINDTVRKAGRGKHILNLGHGIKVGTPEENVAHFFEVAKAIQY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2171 387 SUPERFAMILY UROD/MetE-like 46 385 IPR038071 -
Apr10g2171 387 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 19 387 - -
Apr10g2171 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Apr10g2171 387 Gene3D - 35 387 IPR038071 -
Apr10g2171 387 CDD URO-D 50 384 IPR006361 GO:0004853|GO:0006779
Apr10g2171 387 Pfam Uroporphyrinogen decarboxylase (URO-D) 46 384 IPR000257 GO:0004853|GO:0006779
Apr10g2171 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Apr10g2171 387 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 19 387 - -
Apr10g2171 387 Hamap Uroporphyrinogen decarboxylase [hemE]. 46 386 IPR006361 GO:0004853|GO:0006779
Apr10g2171 387 TIGRFAM hemE: uroporphyrinogen decarboxylase 49 383 IPR006361 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2171 Apr-Chr10 34209958 34212923 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2171 K01599 - gmx:100800753 721.465