Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2162 ATGGCCGATCAGTTATCGAAGGCTGAGGATTTCGAGAGGAAAGCTGAGAAGAAGCTCAGCGGTTGGGGCTTGTTTGGCTCCAAATACGAAGATGCTGCCGATCTCTTCGATAAAGCCGCCAACTCCTTCAAGCTCGCTAAATCATGGGACAGAGCGGGATCGACATACCTAAAGTTGGCAAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAGGCTTATGTTGACGCTGCTCATTGCTATAAAAAAACTCTTATAAATGAGGCTGTATCTTGCTTAAACAATGCTGTAGATCTTTTCTGTGACATTGGAAGACTCTCTATGGCTGCTAGATATCTAAAGGAAATTGCTGAACTATACGAGTCTGAACAGAATATTGAGCAGGCTGCTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCGAACCAATGCAAACAAAAAGTTGCCCAATTTTCTGCTCAGCTAGAACAATATCAGAAGTCGATTGAGATTTATGAAGAAATAGCTCGCCAATCTCTCAACAGTAATTTGCTGAAATACGGAGTTAAAGGACACCTGCTTAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTTGTTGCTATAACCAATGCATTAGAAAGATATCAGGAATTAGATCCAACATTTTCAGGAACACGTGAATATAGATTATTGGCGGATGTTGCTGCTGCAATTGATGAAGAAGATGTTGGAAAGTTTACTGATGTGGTCAAGGAATTTGATAGCATGACCCCTCTCGATTCCTGGAAGACGACACTTCTTTTGAGGGTGAAGGAAAAACTGAAAGCCAAAGAACTTGAGGAAGATGATCTTACTTGA 870 0.4092 MADQLSKAEDFERKAEKKLSGWGLFGSKYEDAADLFDKAANSFKLAKSWDRAGSTYLKLANCHLKLESKHEAAQAYVDAAHCYKKTLINEAVSCLNNAVDLFCDIGRLSMAARYLKEIAELYESEQNIEQAAVYYEKSADFFQNEEVTTSANQCKQKVAQFSAQLEQYQKSIEIYEEIARQSLNSNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTREYRLLADVAAAIDEEDVGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2162 289 CDD SNAP 7 278 IPR000744 GO:0006886
Apr10g2162 289 Coils Coil 151 178 - -
Apr10g2162 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Apr10g2162 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Apr10g2162 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Apr10g2162 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Apr10g2162 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Apr10g2162 289 PRINTS NSF attachment protein signature 120 137 IPR000744 GO:0006886
Apr10g2162 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Apr10g2162 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Apr10g2162 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Apr10g2162 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Apr10g2162 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Apr10g2162 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2162 Apr-Chr10 34148165 34152173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2162 K15296 - gmx:100814639 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2162 10 34148165 34152173 Apr10g2162 10 34148165 34152173 ECH