Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2066 ATGGCTTACAAAGTGGACCATGAATACGATTATCTCTTCAAGATCGTACTCATTGGGGACTCTGGTGTTGGAAAATCCAATATCCTCTCCAGGTTTACCCGAAACGAGTTCTGCTTGGAGTCCAAGTCCACCATTGGGGTTGAATTCGCAACCAGAACATTACAGGTGGAGGGGAAGACAGTGAAGGCACAAATATGGGATACTGCTGGTCAAGAGAGGTACAGAGCTATCACTAGTGCATACTATAGAGGAGCCGTTGGTGCCTTGTTGGTCTATGACATAACCAAGAGGCAAACATTTGACAATGTACAAAGGTGGCTTCGTGAACTGAGGGACCATGCAGACTCTAACATTGTTATTATGATGGCTGGAAATAAGTCTGACCTCAATCACTTGAGAGCAGTGTCTACTGAAGATGCTCAAAATTTGGCTGAGAAGGAGAGTCTCTCATTCCTAGAGACTTCAGCATTGGAAGCCTTTAATGTTGAGAAGGCATTTCAAACAATTTTGTTTGATATATACCAAATTATAAGTAAAAAGGCACTGGCAGCACAGGAAGCAGCTTCCACTACTACCCTTCCTCAAGGAACAACCATAAATGTCTCAAATATGTCAGGTAGTGTGGAGAAGAGAAGTTGTTGCTCTAATTAA 651 0.427 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAQNLAEKESLSFLETSALEAFNVEKAFQTILFDIYQIISKKALAAQEAASTTTLPQGTTINVSNMSGSVEKRSCCSN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2066 216 SMART ran_sub_2 18 201 - -
Apr10g2066 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Apr10g2066 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Apr10g2066 216 SMART ras_sub_4 10 176 - -
Apr10g2066 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Apr10g2066 216 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Apr10g2066 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Apr10g2066 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Apr10g2066 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Apr10g2066 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Apr10g2066 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Apr10g2066 216 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Apr10g2066 216 PANTHER - 1 216 - -
Apr10g2066 216 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 216 - -
Apr10g2066 216 ProSiteProfiles small GTPase Ras family profile. 1 193 IPR001806 GO:0003924|GO:0005525
Apr10g2066 216 CDD Rab11_like 10 174 - -
Apr10g2066 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Apr10g2066 216 Gene3D - 5 214 IPR027417 -
Apr10g2066 216 SMART rab_sub_5 13 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2066 Apr-Chr10 33428396 33429742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2066 K07904 - gmx:100799521 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1372 9 23334553 23336796 Apr10g2066 10 33428396 33429742 ECH
Apr10g2066 10 33428396 33429742 Apr10g2066 10 33428396 33429742 ECH
Apr10g2066 10 33428396 33429742 Apr9g1372 9 23334553 23336796 PCT