Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2037 ATGCCCACTTCCATACATCACTTCATTGTTTTCTACTTCCTAGTCTCCATCTCCCTCACAGATGGGACAGAACTGATAATGGTAAACAATTGCAAAGAGAGTGTGTGGCCAGGAATTCTTGGCACTGGAGAAAACCCTTCTCCTAAAGATGGGGGGTTTCACCTTGCTAGTGGGGAGGAGGTCAATCTCCAAGTCCCTGAGGGGTGGTCAGGGAGAATATGGGGTAGACAAGGCTGTTACTTTGATGAACAAACAAACAAAGGGTCTTGTGAAACAGGTGATTGTGGAGGCCTTTTGCAATGCAAGGGCATTAGTGGAGTCCCTCCTACAACCCTTGTAGAAATGACCCTTGGAACCCCTCAGTCACCGTTGCATTTCTATGATGTTAGTTTGGTTGATGGGTTTAACCTTCCCGTGTCCATGAAGCCTGTGGGTGGTGGTGGTGCTTGTGGTGTTGCATCATGTGAGGCTGATTTGAATGTTTATTGTCCGTCTGCATTGGTTGTGGAGAGGAATAAGAAGGTTGTGGGTTGTAAAAGTGCTTGTTTGGCTGCAAAATCAGATAGGAATTGTTGCACTGGTGAGTTTGCTAACGCCAAAAGTTGCAAGCCAAGTGTGTTTGCTCGTCTTTTCAAGACCATTTGCCCTCATGCTTATAGCTATGCTTATGATGGTTCACAAGTTCTTAAGACTTGCATGGCACCCCGCTATGTCATTACTTTTTGCCCTCCACATTGA 738 0.4593 MPTSIHHFIVFYFLVSISLTDGTELIMVNNCKESVWPGILGTGENPSPKDGGFHLASGEEVNLQVPEGWSGRIWGRQGCYFDEQTNKGSCETGDCGGLLQCKGISGVPPTTLVEMTLGTPQSPLHFYDVSLVDGFNLPVSMKPVGGGGACGVASCEADLNVYCPSALVVERNKKVVGCKSACLAAKSDRNCCTGEFANAKSCKPSVFARLFKTICPHAYSYAYDGSQVLKTCMAPRYVITFCPPH* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2037 245 SUPERFAMILY Osmotin, thaumatin-like protein 25 244 IPR037176 -
Apr10g2037 245 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Apr10g2037 245 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Apr10g2037 245 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Apr10g2037 245 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Apr10g2037 245 ProSiteProfiles Thaumatin family profile. 25 245 IPR001938 -
Apr10g2037 245 PANTHER OS03G0233200 PROTEIN 3 245 IPR001938 -
Apr10g2037 245 PIRSF PR5 1 245 IPR001938 -
Apr10g2037 245 SMART tha2 25 243 IPR001938 -
Apr10g2037 245 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 3 245 - -
Apr10g2037 245 Pfam Thaumatin family 29 243 IPR001938 -
Apr10g2037 245 CDD TLP-PA 24 242 - -
Apr10g2037 245 Gene3D Thaumatin 24 243 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2037 Apr-Chr10 33212808 33214243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2037 4 243 Receptor kinase-like Gene Family AT5G38280 39.676 1.01e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2037 - - gsj:114381056 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1351 9 23139252 23140478 Apr10g2037 10 33212808 33214243 ECH
Apr10g2037 10 33212808 33214243 Apr10g2037 10 33212808 33214243 ECH