Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2027 ATGGAGTCTCCAGAGGCCAGAAAAACAGGGTTGAACCTCCCAGCTGGGATGTCAGGAACCTCACTGCGCTTAGACACTTTCTCTTCACTTCGTTCCATCTCCAACCTCTCTTCTTCTCCTTCTTCAAAACCTTCCACATGCAGTGATAGGTTCATACCCTGCAGGTCCTCTTCAAGGCTCCACACATTTGGCCTCATAGAGAAGCCATCACCTGTCAAAGAAGGGAGTGCTCCTCCTTCTCCCATTAGTCCCAGCAAGAACATGCTTCGCTTCAAGACTGATCACTCTGCACCTTCTTCCCCTTTCTCTCCTTCAATCTTAGGCCAACAATCTACCTTCTCTTCTGAATCTTCAACCCCTCCCAAACCTCCTCGGAAAGTTCCCAAGACACCCCACAAGGTTCTGGATGCCCCATCTCTGCAAGATGACTTTTACTTGAATCTGGTGGACTGGTCCTCACAAAATGTTCTTGCTGTGGGGCTAGGCACTTGTGTTTATCTATGGAGCGCTTCCAACAGCAGAGTGACTAAGTTATGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAATGGACCCGGGAGGGTTCTTTTATATCGGTTGGAACAAATCTTGGTCAAGTTCAGATTTGGGATGGAGCACGCTGTAAGAAGGTCAGAACAATGGGTGGACATCAGACAAGAACCGGTGTCTTGGCGTGGAACTCTCGCATTTTGGCTTCAGGGAGTAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTGGCAAACTTGTTGGTCATAAATCTGAGGTATGTGGATTGAAATGGTCCTGTGATGATAGGGAACTTGCTTCTGGGGGTAATGATAATCAGCTGTTGGTATGGAATCAGCACTCTCAGCAACCGGTTTTGAGACTTACGGAGCACACTGCTGCTGTTAAGGCCATTGCTTGGTCACCTCATCAAAGCAGTCTCCTTGTGTCTGGAGGTGGAACAGCTGATAGGTGTATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACAGTGTTGATACTGGGAGCCAGGTTTGCAACCTTGCTTGGAGTAAAAATGTGAATGAACTAGTTAGTACTCATGGGTACTCCCAAAATCAGATTATGGTGTGGAAATATCCATCATTGGCAAAGGTTGCAACTCTAACTGGCCATAGCATGAGAGTGCTGTACCTAGCAATGTCTCCTGATGGTCAGACTATAGTAACTGGTGCTGGGGATGAGACATTGCGGTTTTGGAATATTTTCCCATCAATGAAAGCACCAGCCCCAGTTAAAGATACAGGACTCTGGTCACTGGGGCGCACCCAAATTCGATGA 1353 0.4708 MESPEARKTGLNLPAGMSGTSLRLDTFSSLRSISNLSSSPSSKPSTCSDRFIPCRSSSRLHTFGLIEKPSPVKEGSAPPSPISPSKNMLRFKTDHSAPSSPFSPSILGQQSTFSSESSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSRVTKLCDLGPYDGVCSVQWTREGSFISVGTNLGQVQIWDGARCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFVGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQSSLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKAPAPVKDTGLWSLGRTQIR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2027 450 Pfam Eukaryotic translation initiation factor eIF2A 288 419 IPR013979 -
Apr10g2027 450 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g2027 450 SMART WD40_4 256 295 IPR001680 GO:0005515
Apr10g2027 450 SMART WD40_4 171 212 IPR001680 GO:0005515
Apr10g2027 450 SMART WD40_4 215 252 IPR001680 GO:0005515
Apr10g2027 450 SMART WD40_4 386 425 IPR001680 GO:0005515
Apr10g2027 450 SMART WD40_4 298 340 IPR001680 GO:0005515
Apr10g2027 450 SMART WD40_4 128 169 IPR001680 GO:0005515
Apr10g2027 450 SMART WD40_4 343 383 IPR001680 GO:0005515
Apr10g2027 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Apr10g2027 450 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 450 IPR033010 GO:0010997|GO:0097027|GO:1904668
Apr10g2027 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 349 IPR001680 GO:0005515
Apr10g2027 450 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Apr10g2027 450 Gene3D - 85 427 IPR015943 GO:0005515
Apr10g2027 450 SUPERFAMILY WD40 repeat-like 122 426 IPR036322 GO:0005515
Apr10g2027 450 ProSitePatterns Trp-Asp (WD) repeats signature. 412 426 IPR019775 -
Apr10g2027 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Apr10g2027 450 MobiDBLite consensus disorder prediction 80 120 - -
Apr10g2027 450 MobiDBLite consensus disorder prediction 66 132 - -
Apr10g2027 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 426 IPR001680 GO:0005515
Apr10g2027 450 PANTHER PROTEIN FIZZY-RELATED 3 9 450 - -
Apr10g2027 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2027 Apr-Chr10 33107795 33111085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2027 262 426 Miscellaneous Gene Families AT5G08390 21.084 1.76e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2027 K03364 - gmx:547741 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2027 10 33107795 33111085 Apr10g2027 10 33107795 33111085 ECH