Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2014 ATGGGAGATCCCGTCGAGAGGGTGGGATCGGAGGGTTTGGATTCCGGCGCCGCCATTAAGACTGATGGATTGTGCATGGAAATCGATCCACCATTTCAGGAAAACGTCGCCACCGCCGAGGACTGGCGCAAAGCTCTCAACAAAGTCGTCCCCGCCGTCGTCGTCCTCCGAACCACAGCTACTCGCTCCTTCGACACCGAGTCCGCCGCCGCCAGCTACGCCACTGGCTTCATAGTCGACAAGCGCCGCGGTATCATTCTCACCAATCGCCACGTCGTAAAGCCCGGTCCTGTAGTTGCCGAAGCCATGTTTTTGAACCGTGAAGAGGTTCCGGTGCATCCGATATACAGAGATCCGGTACATGATTTTGGGTTCTTTCGCTATGATCCTTTTGCTGTGCAATTTCTGAACTATGAGGAGATACCTCTTGCTCCTGAGGCTGCTTGTGTGGGACTAGAAATCAGAGTTGTTGGTAATGATAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGACAGGGATGCTCCTCACTATAAGAAGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATTGATTGGCAAGGCAGGGCAGTCGCCCTCAATGCTGGGAGCAAGTCATCAAGTGCATCAGCATTCTTTCTACCTCTAGAACGGGTTGTGAGGGCATTAAGGTTTCTTCAAAAGGGAACCGAAACTTATGTTGATAAATGGAAAGCTGTTTCTATACCTCGTGGTACGCTCCAGGTGACATTTCTCCATAAAGGGTTCGATGAGACTCGTCGTCTTGGCCTCAGAAGTGAGACAGAGCAGATAGTAAGACATGCTTCTCCAGTTGGTGAAACTGGAATGCTTGTCGTGGACTCTGTGGTGCCAGGTGGTCCAGGTTATAAACATTTGGAGCCGGGTGATGTACTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTCCTGAAACTGGAGACTATACTTGATGACAGTGTAAACCAGAATATTGAATTGCAAATTGAAAGGGGTGGTACATCAAAGAGTTTAACTTTATTGGTGCAAGATTTGCACTCAATAACTCCTGATTATTTCTTAGAAGTGAGTGGGGCAGTAATACATCCTCTGTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGTGGTCTTGTTTATGTTGCTGAACCAGGATATATGCTCTTTAGAGCAGGAGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGCGAAGAAATATCTTCTCTTGAGGAACTAATATTAGTTCTCTCTAAGATATCTAGGGGTGCTCGAGTACCATTGGAATATATAAGCTATATGGATCGTCATCGAAGGAAGTCTGTGTTAGTGACTGTTGATCGGCACGAATGGTATGCACCTCCCCGGATATACACTCGTGATGACAGTACTGGCCTCTGGATTGCCAGGCCTGCTTTTCAGCTTGATTGCCCTTTTCTATCATCTGGTGCTAAAGATGTTGGAAATCTTGCCAGACAGCCAGTTTCACTAACTGGTGAGCATGCTTGTGGGGGACATGTGTGTGAAGATAACAATCATGAGTTGGTTGATGGTGTCACTAGCATGGAAACCAATTATGAAGAACCTTCAGAGTATGTATCACACCACAATGCATCTGATGGCATGATGAAAAAACGAAGAGTGGATGAAGATTTATCAGCAGATGGAAGTGTAGTTGCTGACTTTTCCTTAAATGATACCAGGGAAACTAAGCTAGAAAAATCAAGTGTTATACAGGATGATGTGTTAATGGACTATCAGGGTGCAACTGCAGCAAATGCATCAGTTGCTGAACGTGTGATTGAGCCTACTCTTGTGATGTTTGAGGTTCATGTTCCTCCATCTTGTATGCTTGATGGTGTTCACTCACAGCACTTTTTTGGAACTGGTGTCATAATATATCACTCCCAAGATATGGGATTAGTTGCAGTTGACAAGAATACAGTGGCAATATCTGCCTCGGATGTGATGCTATCCTTTGCTGCTTTCCCAGTTGAAATTCCAGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCTCTCATATCATATGATCCCTCTGCTTTGGGACCTATTGGTGGTTCAGTGGTTCGTGCTGCAGAGTTACTTCCAGAGCCGGGGTTACGTCGGGGGGATTCTGTTTATCTTGTGGGGTTGAGTAGAAGCCTTCAAGCAACTTCGAGGAAATCAGTTGTTACCAATCCTTGTGCTGCATTAAATATAGGATCTGCTGATTCCCCTCGTTACAGAGCAACCAATATGGAAGTAATTGAGCTTGATACAGATTTTGGTAGTACATTTTCGGGTGTGCTAACAGATGAACAAGGAAGGGTGCAAGCTATATGGGGAAGCTTCTCAACTCAGAAGAAGGACAAGAGAAGAAAGACGAAAACTGGAAAGAGACGAAAGAAGGCTATTTTTACTCGAACTTCAAAAGGCTACCTGATGCTGAAATTTGGTTGCAGTACATCAGAAGATCATCAATTTGTGAGGGGTATTCCGATTTATGCAATAAGTCAGGTCCTTGACAAGATTGTATCTGGTGCAAATGGGCCAACTCTTCTCATAAATGGTGTCAAAAGGCCTATGCCACTTGTCAGAATATTAGAGGTTGAACTTTATCCAACATTGCTTTCAAAAGCTCGGAGTTTTGGATTAAGTGATGATTGGATTCAGGCTCTTGTTAAGAAAGATCCAGTAAGACGCCAAGTTTTGCGTGTAAAGGGTTGTTTGGCTGGATCAAATGCTGAGAATCTTTTAGAACAAGGGGACATGGTTTTAGCTATCAATAAAGAACCAGTCACATGTTTCCATGACATTGAAAATGCATGCCAAGCGTTAGACAAATCTTGCGCCAGTGACGGGAAGCTTCACATGACTATTTTCCGGCAGGGACAAGAAGTTGAGCTTGTTGTGGGAACAGATGTTAGGGATGGTAATGGTACTACTCGTGCAATTAATTGGTGTGGTTGTATTGTTCAAGATCCACATCCAGCAGTACGTGCTCTTGGATTTCTTCCTGAAGAAGGTCATGGTGTATATGTTGCAAGGTGGTGTCATGGGAGTCCTGTACATAGATACGGTCTATATGCTCTTCAGTGGATAGTTGAAATTAACGGAAAACCAACTCCAAATCTAGATGCTTTCGTTGACGTGACGAAGGAACTAGAGCATGGAGAGTTTGTTCGTGTAAGGACAATTCACCTAAATGGGAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCACTACTGGCCTACATGGGAATTGAGATTTGATCCAGACTCTGCAATGTGGCATCGTAATATAATCAAGACATTAAAGCACAGTACTGTATGA 3420 0.4436 MGDPVERVGSEGLDSGAAIKTDGLCMEIDPPFQENVATAEDWRKALNKVVPAVVVLRTTATRSFDTESAAASYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPFAVQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQKGTETYVDKWKAVSIPRGTLQVTFLHKGFDETRRLGLRSETEQIVRHASPVGETGMLVVDSVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETILDDSVNQNIELQIERGGTSKSLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISSLEELILVLSKISRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPRIYTRDDSTGLWIARPAFQLDCPFLSSGAKDVGNLARQPVSLTGEHACGGHVCEDNNHELVDGVTSMETNYEEPSEYVSHHNASDGMMKKRRVDEDLSADGSVVADFSLNDTRETKLEKSSVIQDDVLMDYQGATAANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVAVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPIGGSVVRAAELLPEPGLRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVQAIWGSFSTQKKDKRRKTKTGKRRKKAIFTRTSKGYLMLKFGCSTSEDHQFVRGIPIYAISQVLDKIVSGANGPTLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSNAENLLEQGDMVLAINKEPVTCFHDIENACQALDKSCASDGKLHMTIFRQGQEVELVVGTDVRDGNGTTRAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDAFVDVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFDPDSAMWHRNIIKTLKHSTV* 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2014 1139 Pfam Trypsin-like peptidase domain 74 220 - -
Apr10g2014 1139 Gene3D - 280 372 IPR036034 GO:0005515
Apr10g2014 1139 Pfam PDZ-like domain 1009 1085 IPR025926 -
Apr10g2014 1139 Pfam PDZ-like domain 373 446 IPR025926 -
Apr10g2014 1139 Gene3D - 146 256 IPR043504 -
Apr10g2014 1139 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 22 818 - -
Apr10g2014 1139 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 843 1134 - -
Apr10g2014 1139 Gene3D - 29 138 IPR043504 -
Apr10g2014 1139 Gene3D - 1012 1110 IPR036034 GO:0005515
Apr10g2014 1139 SUPERFAMILY PDZ domain-like 933 1035 IPR036034 GO:0005515
Apr10g2014 1139 SUPERFAMILY Trypsin-like serine proteases 630 816 IPR009003 -
Apr10g2014 1139 CDD PDZ_serine_protease 280 366 - -
Apr10g2014 1139 PANTHER PROTEASE DO-LIKE 7 22 818 - -
Apr10g2014 1139 PANTHER PROTEASE DO-LIKE 7 843 1134 - -
Apr10g2014 1139 SMART pdz_new 907 992 IPR001478 GO:0005515
Apr10g2014 1139 SMART pdz_new 280 359 IPR001478 GO:0005515
Apr10g2014 1139 SMART pdz_new 1028 1097 IPR001478 GO:0005515
Apr10g2014 1139 Pfam Peptidase family M50 268 371 IPR008915 GO:0004222|GO:0006508
Apr10g2014 1139 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Apr10g2014 1139 Pfam PDZ domain 305 357 IPR041489 -
Apr10g2014 1139 Gene3D - 906 1005 IPR036034 GO:0005515
Apr10g2014 1139 SUPERFAMILY PDZ domain-like 1037 1116 IPR036034 GO:0005515
Apr10g2014 1139 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Apr10g2014 1139 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Apr10g2014 1139 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Apr10g2014 1139 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Apr10g2014 1139 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Apr10g2014 1139 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Apr10g2014 1139 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2014 K22686 - gmx:100809144 2079.29