Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2010 ATGAAAGAAAGCAGAAAGAGAGGGTACCCTTCTCCTTCGTCACCTTCTTCAGCTTCTCCAATTTCGAACAACAAACGCTCCAATTTCACTTCCTTCCAAGACATTCCAAACCTTCCATCCAACACCAAATCCCTCTGCCACATCATCGCCACCACCCCTTCCCTCTCCGTTGAACAAACCCTCCAAGATTCGGGCATTTCGGTCACCGCCCAAGAAGTCGAAATTGTTCTCAAACTCTCTTACGGGTTCCCCGGTCAGGCCGTTAAGTTCTTCCGTTGGAGCGCTCACCAACTCAACCACAACCTCACCCCTTATTCATGGAACCTCGTTGTTGATATCTTAGGTAAAAATCGTTTCTTTGATGCAATGTGGGATGCTATTAAATCAATGAACATTAAAGGGTTGCTTTCACTTGCCACATTTGCCTCTGTTTTCGGTAGTTATGTCGCCGCCGGCCGTCTTCGTGAGGCCATTATGGCGTTTGAGGTTATGGAGAATTATGGATGCGTTAGGGATGTTGTTGCTTTGAATTCCTTGTTGAGTGCTATATGCAGGGATGGTAGGACTATTGATGCTTGTGATTATTTGCAAATTGCTAAGAATTTCGTTAGGCCGGATGCAGATACTTACGCGATTTTGATGGAGGGGTGGGAGAGTGAGGGTGAAAAGGGTGTTGTTGGTGCTAAGGAGAGTTTTGCTGAGATGGTTATTGAGATTGGTTGGGATCCAGTTAATGTGGCGGCATATGATTCGTTTTTGTGTACATTGATTAAGGGGCCAGATGGGTTGCTTGAGGCTATTAAGTTCTTTGATTCAATGAGAGATAGGAGCTGTTACCCTGGGATGAGGTTTTTCAAGGTTGCAATGGATGAGTGTGTTAAGCAACGTGATGTTCGGACAGCCGAGTTTTTTTGGGAGGTGATGGTGGGGAAGACTGGATTGCAACCCACCACGCAGATTTACAATTCGATGATTGCTTTGTATTGCTATTGCAGTGATACAGATGCTGCTAGGAGGATGTTGGATGAGATGGTTTATAGAGGGGCTTTTCCAGATGTGCTTACTTATAACTTGTTGTTTCAGTTCTTGATCAAGGGAAGGAAATTGCGTGAGGCTTCGGCGGTGTTTGTTGAGATGGTGAAAAATGAGTGTGTTCCAGACCAAGCTAATTGTGATGCAGCTGTTAGAGTTTACTTGGATAATGCGGATCCTTTTATGGCAATGAAAGTTTGGAAATGCTTGCTGGAGAATTATGATAAGGATTTGGAGCGTACAGCAAATTTACTGGTTTTAGGGCTTCGTGATCAAAATAGGCTCCCTGAAGCAGTTAAGTATGCTGAGGATATGATTGGCAGAGGAATCAAGATATCCTCTTCCACATTGTCTAAGCTGAGACAAAGCCTGCTCAAAGAAAGAAAAGAATTTATGTATGAAGAACTTTTGAGAAAGTTGAAATCTAATTAA 1464 0.4358 MKESRKRGYPSPSSPSSASPISNNKRSNFTSFQDIPNLPSNTKSLCHIIATTPSLSVEQTLQDSGISVTAQEVEIVLKLSYGFPGQAVKFFRWSAHQLNHNLTPYSWNLVVDILGKNRFFDAMWDAIKSMNIKGLLSLATFASVFGSYVAAGRLREAIMAFEVMENYGCVRDVVALNSLLSAICRDGRTIDACDYLQIAKNFVRPDADTYAILMEGWESEGEKGVVGAKESFAEMVIEIGWDPVNVAAYDSFLCTLIKGPDGLLEAIKFFDSMRDRSCYPGMRFFKVAMDECVKQRDVRTAEFFWEVMVGKTGLQPTTQIYNSMIALYCYCSDTDAARRMLDEMVYRGAFPDVLTYNLLFQFLIKGRKLREASAVFVEMVKNECVPDQANCDAAVRVYLDNADPFMAMKVWKCLLENYDKDLERTANLLVLGLRDQNRLPEAVKYAEDMIGRGIKISSSTLSKLRQSLLKERKEFMYEELLRKLKSN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2010 487 MobiDBLite consensus disorder prediction 1 24 - -
Apr10g2010 487 TIGRFAM PPR: pentatricopeptide repeat domain 355 387 IPR002885 -
Apr10g2010 487 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Apr10g2010 487 TIGRFAM PPR: pentatricopeptide repeat domain 320 352 IPR002885 -
Apr10g2010 487 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 18 479 - -
Apr10g2010 487 Gene3D Tetratricopeptide repeat domain 311 430 IPR011990 GO:0005515
Apr10g2010 487 Gene3D Tetratricopeptide repeat domain 195 310 IPR011990 GO:0005515
Apr10g2010 487 Pfam PPR repeat 140 169 IPR002885 -
Apr10g2010 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Apr10g2010 487 MobiDBLite consensus disorder prediction 9 24 - -
Apr10g2010 487 Pfam PPR repeat family 316 362 IPR002885 -
Apr10g2010 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Apr10g2010 487 PANTHER - 18 479 - -
Apr10g2010 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Apr10g2010 487 Gene3D Tetratricopeptide repeat domain 78 193 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2010 Apr-Chr10 32987016 32988549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2010 106 485 Glycosyltransferase AT1G05670 23.460 2.80e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2010 - - pvu:PHAVU_001G231300g 756.518