Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1990 ATGCTTCTGCGTGTGGCAGCATCAAATTTGCTCAAAAAACTTCGTTTTTCTGCTTCGTATGCCTTCCCTGCCACCACAAATGCATTGCCCATCTCATTTTCCGGTAAACTTTCTCATTGGTATCAAACTGGTGAATATGGTTGGAGGATAAATTTTAAGGATCCTTCTTGTCTATGGATTGTTATATCCGGACATGTAGCAATTACTTTGGGAATTGGTGCCAGCACTGTGTTTGCAGAAGATGCAACACCAAGAGCATCTTCTGACGATGGCCTGGGGGATGACTCAATTGGATTAAGAAAAATTGAAGATGGTTCTGTAGTGTCAAACATACATACAGCAAAATGGAGAGTTTTTACAGATAAAGCAAGAGATCTTTTCCTACAGGGAAAACTAGATGAAGCTGAAAAACTCTTCCTCTCTGCTGTACAAGAAGCTAAAGAAGGTTTTGGCCAGCAAGATCCGCATGTTGCTTCTGCGTGCAACAATCTGGCTGAGCTGTACAGGGTCAAAAAGGCATTTGACAAAGCAGAACCATTGTATTTGGAAGCTATCAACATATTAGAGGAATCTTTTGGTCCTGATGATATTCGGGTTGGCGTTGCTGCTCACAACCTTGGCCAGTTCTACCTTGGACAGCGGAAGTTGGAAGAAGCTCGTGTTAGCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGATATGGCCACTCAGAATGTTCAGATACAATGTATCATCTAGGAGTGGTGCTGTACCTTCAAGGAAAAGAAAGGGATGCTGAAGCCCTTATTAAGGACTCCATAAGGATGCTAGAGGAAGGTGGTGAAGGAGAGTCATTTGCATGCATTAGAAGACTACGATACCTTTCACAGATATATATGAATTCACATCGACTTGCTGAAGCTGAGATGGTCCAGAGAAAGATCCTGCATATTATGGAATTGTCAAAGGGATGGAATTCCTTGGACACAGTTATTGCAGCGGAATCTTTGGCTCTGACCCTGCAAGCATCTTTCAATACAAAAGATTCAAAAGAGCTTCTTGAAAGATGCCTTAATGCCCGGAAAACCATACTTCCTGGTGACCATATTCAGATTGGTGCAAACCTACTTCATCTAGCAAGAGTGCTGATGCTTGATTGCAGTCAACATAAAAAGTGGGATGTTTCTAGAGCTAAAGCTGAGCTTGATATGGCAAAGGATCACTTGCATAATTCCACAAGGATTGCACGTCAATGTTTAGAGAAGGTATTGAAACAAAAGGACAAGTCAAAAAAATACAGAGATTCTAGAAAGGAAGTTCAAGCAGCATTGACCATATTGTTGCAATCACTCAATACTTTGTCATCAGTGGAGCAAGCAAAGCAAGAATTGCAGGAAACTCAGGAACAGAATATTAACCTTGAGGCTCAGAAGGCACTTCTTCAATGCATTTCTGCTTACAAGGAGTTTGTAAATGAGAGGTCAATTGTTGATGCACCTGAAATAAAGAACGAGTATCGTTCATGTTTAAAGCGTGCACAAAATTTTCTTGGTAATAAAGTTGATGAAGAGTCAAGCAATCAAAAGGATTTCCGAAAGCTGAATCAAACAAAAGCATGA 1605 0.41 MLLRVAASNLLKKLRFSASYAFPATTNALPISFSGKLSHWYQTGEYGWRINFKDPSCLWIVISGHVAITLGIGASTVFAEDATPRASSDDGLGDDSIGLRKIEDGSVVSNIHTAKWRVFTDKARDLFLQGKLDEAEKLFLSAVQEAKEGFGQQDPHVASACNNLAELYRVKKAFDKAEPLYLEAINILEESFGPDDIRVGVAAHNLGQFYLGQRKLEEARVSYERALKIKRRVLGYGHSECSDTMYHLGVVLYLQGKERDAEALIKDSIRMLEEGGEGESFACIRRLRYLSQIYMNSHRLAEAEMVQRKILHIMELSKGWNSLDTVIAAESLALTLQASFNTKDSKELLERCLNARKTILPGDHIQIGANLLHLARVLMLDCSQHKKWDVSRAKAELDMAKDHLHNSTRIARQCLEKVLKQKDKSKKYRDSRKEVQAALTILLQSLNTLSSVEQAKQELQETQEQNINLEAQKALLQCISAYKEFVNERSIVDAPEIKNEYRSCLKRAQNFLGNKVDEESSNQKDFRKLNQTKA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1990 534 SUPERFAMILY TPR-like 116 261 IPR011990 GO:0005515
Apr10g1990 534 Gene3D Tetratricopeptide repeat domain 280 484 IPR011990 GO:0005515
Apr10g1990 534 Gene3D Tetratricopeptide repeat domain 117 279 IPR011990 GO:0005515
Apr10g1990 534 SUPERFAMILY TPR-like 239 355 IPR011990 GO:0005515
Apr10g1990 534 Coils Coil 445 479 - -
Apr10g1990 534 Pfam Tetratricopeptide repeat 122 190 - -
Apr10g1990 534 Pfam Tetratricopeptide repeat 201 274 - -
Apr10g1990 534 SMART tpr_5 200 233 IPR019734 GO:0005515
Apr10g1990 534 SMART tpr_5 116 149 IPR019734 GO:0005515
Apr10g1990 534 SMART tpr_5 158 191 IPR019734 GO:0005515
Apr10g1990 534 SMART tpr_5 242 275 IPR019734 GO:0005515
Apr10g1990 534 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Apr10g1990 534 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 524 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1990 - - ccaj:109796654 879.782