Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1988 ATGTCTTCATCACCGCTCTGCGACAACAACATGCATCTCTTTCTCCTCTTCTTCTACCTTTTCTTCTCCGTTAACCTCTCTTCACAACACAACACCACCGCAACCTCATTCTCACTCTCTTTCCCTCTAACCCCACTTTCTCTCTCCACCAACACAACCTCAAAGATGCTATATACCTCTATGGTTTCAAACCCACGACTCAAAACACCTTCTTCTTCCTACAACTACAAGTTATCGTTCAAGTATTCGATGGCTCTCATCGTGAACCTTCCCATCGGAACGCCACCGCAGGTTCAGCCAATGGTGTTGGACACCGGAAGCCAACTCTCTTGGATTCAGTGTCACAAAAAAGCACCCAAACCTCCCCCAACGGCGTCGTTTGACCCTTCTCTCTCTTCCACTTTCTCTATCCTTCCTTGCACTCACCCTGTTTGTAAACCCCGAATTCCCGATTTTACCCTTCCCACTTCGTGTGACCAGAACCGCCTCTGCCATTACTCTTACTTCTACGCCGACGGGACATACGCCGAGGGAAATCTCGTCAGAGAAAAATTTACCTTTTCTCGTTCCCTTTCTACCCCTCCCTTGATACTCGGTTGCGCCACGGAATCTACCGACCCCAGGGGCATTTTGGGAATGAATCGGGGACGCTTGTCCTTCGGTTCTCAGTCAAAAATAACTAAATTCTCTTACTGCGTACCCATTCGTCAAACCCGACCCGGATCCATCCCGACCGGGTCGTTTTACCTCGGTGACAACCCGAATTCATCCGGGTTTAAGTATGTTGAAATGTGCACTTTTGCTCAGAGTCAACGCATGCCGAACCTTGACCCGTTGGCATACACCGTCCCCATGCAGGGAATAAGGATCGGCGGGAAGAGGTTGAATATTTCGCCGGCGGTTTTCCGTGCGGATGCTGGCGGGTCTGGTCAAACCATGGTTGACTCCGGGTCCGAGTTTACGTATCTGGTTAATGAGGCTTATGATAAGGTGCGGGCGGAAGTAGTGAGGGTTGTAGGGCCAAGGATGAAGAAGGGTTACGTGTACGGTGGAGTTGCTGACATGTGCTTTGATGGGAACGCGGTTGAGATCGGACGGTTGATAGGGGACATGGTGTTTGAATTTGAGAAGGGCGTGGAAATTGTGATTCCCAAGGAGAGGGTTCTCGCTGACGTTGGAAGTGGGGTCCATTGCGTGGGGATTGCAAGCTCAGATAAATTGGGTGCGGCCAGTAACATTATTGGAAATTTTCACCAGCAAAACCTGTGGGTGGAGTTTGATCTGGCCAATCGTAGAGTGGGATTCGGTGGCGCTGATTGTAGCAGATTGGCTAAGTAG 1338 0.5015 MSSSPLCDNNMHLFLLFFYLFFSVNLSSQHNTTATSFSLSFPLTPLSLSTNTTSKMLYTSMVSNPRLKTPSSSYNYKLSFKYSMALIVNLPIGTPPQVQPMVLDTGSQLSWIQCHKKAPKPPPTASFDPSLSSTFSILPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLSTPPLILGCATESTDPRGILGMNRGRLSFGSQSKITKFSYCVPIRQTRPGSIPTGSFYLGDNPNSSGFKYVEMCTFAQSQRMPNLDPLAYTVPMQGIRIGGKRLNISPAVFRADAGGSGQTMVDSGSEFTYLVNEAYDKVRAEVVRVVGPRMKKGYVYGGVADMCFDGNAVEIGRLIGDMVFEFEKGVEIVIPKERVLADVGSGVHCVGIASSDKLGAASNIIGNFHQQNLWVEFDLANRRVGFGGADCSRLAK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1988 445 PANTHER ASPARTYL PROTEASE-RELATED 14 445 IPR001461 GO:0004190|GO:0006508
Apr10g1988 445 Pfam Xylanase inhibitor C-terminal 280 435 IPR032799 -
Apr10g1988 445 CDD pepsin_A_like_plant 87 440 IPR034161 -
Apr10g1988 445 SUPERFAMILY Acid proteases 87 443 IPR021109 -
Apr10g1988 445 Gene3D Acid Proteases 75 251 IPR021109 -
Apr10g1988 445 ProSiteProfiles Peptidase family A1 domain profile. 86 436 IPR033121 -
Apr10g1988 445 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 14 445 - -
Apr10g1988 445 Gene3D Acid Proteases 252 444 IPR021109 -
Apr10g1988 445 Pfam Xylanase inhibitor N-terminal 87 242 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1988 Apr-Chr10 32770428 32772964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1988 88 445 Miscellaneous Gene Families AT1G44130 23.618 3.12e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1988 - - gmx:100806624 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1988 10 32770428 32772964 Apr9g1295 9 22611062 22614755 PCT