Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1688 ATGGCTACTCCTCTTTCTACCATCGTGGATATCTACTTCACAGACACCAAAAGAACAAGGTTTTCCTTCACCACGCCTTCTACTTCTAAGCAAAAAATCCGTAGAAAAATTTCCATACACTGCACCACTTCCAATTCCATTCCAGAAGCTCCTCCCACATCAACCTCTGACAACAGCAACAAGAAGAAGAAAAACACTTCCTTGTCCGACCAACTCGCACCCCTTGCCAACAAAACCTTATCAACGGTCACAGGAGACCAACCCTACGTCTTGTCTAAGCCAAAATCCACATGGGTCAACCCCACTAAGGCCAAGCGCTCTGTGCTCTCACCTGAGAGGCAAAAACGTGTTCCTCACTCATACTCTCCACAACTCAGAGATTTGAAACGCATTGCTCAGAAACTCAATGATTCTGATTCCCTCTCCGAGGCTCAATTCTTGGCTTCTTTGGTGGAAATCCCACGTCCACTTACTAGAGAAAACGCCCTCTTGATGCTCAACACATTGAAGCCATGGCAAAAGACTCATCTTTTTTTGAATTGGATCAAGACCCAGAATTTGCTTCCCATGGAAACCATATTCTACAATGTCACAATGAAGTCTTTGAGGTTTGGGAAGCAATTTCAGCTGATAGAGGAGCTTGCACACCAGATGATTGACAATGAGATTCAACTGGATAATATCACATACTCAACCATCATATCATGTGCCAAGAAGTGCAACCTTTCTGACAAGGCTGTGCATTGGTTTGAGAGGATGTACAAGACTGGTTTGATGCCAGATGAGGTAACTTATTCTGCTATATTAGATGTTTATGCTAGGTTAGGCAAAGTTGAAGAGGTGATAAGTTTATATGAGAGAGGGAGAGCAACTGGGTGGAAGCCTGATCCTATCACATTCTCTGTGTTGGGGAAGATGTTTGGGGAAGCTGGGGACTATGATGGTATTAGGTATGTGCTGCAAGAGATGAAGTCTGTTGGGGTGCAACCTAATTTAGTTGTGTATAACACCTTGTTGGAGGCAATGGGAAAGGCTGGGAAGCCAGGGTTTGCAAGGAGCCTGTTTGAGGAAATGATTGAGTCGGGGATAGCCCCGAATGAGAAGACTCTAACCGCTGTTATTAAGATATACGGCAAGGCCAGGTGGTCGAGAGATGCTTTGGAATTGTGGCAACGGATGAAGGAAAATGGCTGGCCTATGGATTTTATTTTGTATAATACATTGTTGAATATGTGTGCGGATGTTGGACTGGTGGAGGAAGCTGAAACTCTGTTTAGGGACATGAAACAGTCTGAGTATAGCAAGCCAGACAGTTGGAGTTACACGGCAATGCTCAATATATATGGGAGTGAAGGGGATGTTGACAAGGCAATGAGATTGTTTGAAGAGATGTGTAAGGTGGGTGTTGATCTCAGTGTGATGGGGTGTACCTGTTTGATTCAGTGCTTGGGAAAGGCCATGGAATTTGATGCTTTGGTAAGAGTTTTTGACATTTCAGTTGAGAGAGGAATTAAGCCAGATGATAGGCTATGTGGTTGCTTGCTATCTGTTGTGTCTCTTTCTCAGGGTAGCAAGGATGAGGATAAAGTCCTCGGTTGTTTGCGGCAAGCTAACCCAAAATTGGTTGCCTTTATTCAATTGATTGATGATGAAAAAACTAGTTTTGAGACTGTCAAGGAAGAGTTCAAGGGCATCATGAGCAATGCAGCAGTTGAAGTGAGAAGACCCTTTTGTAACTGCTTGATTGACGTATGTAGAAACAAGGATCTTCTAGAGAGAGCCCATGAGCTACTCTACTTGGGAACCTTGTATGGATTATACCCAGGTTTGCATAACAAAACTGACCAAGAATGGTGTTTAGATGTTCGATCATTGTCAGTTGGTGCAGCTCTAACTGCACTCGAAGAGTGGATGTGGACACTCACCAAAATTGTTAACCGAGAGGGTCCACTGCCAGGGTTACTGCTAGCCCAAACTGGTACTGGTGCTCATAAGTTTGCCCAAGGACTCAACATTTCTTTTGCCTCTCATTTGAGGAAACTAGCTGCTCCATTTAGGCAGAGTGAGGATAAAGTTGGCTGTTTTATTGCAACTAGAGAGGATTTAGTCTCTTGGGTTCAATCAAATTCTCCGTCGGCTGCTACTGTAACATAG 2154 0.4392 MATPLSTIVDIYFTDTKRTRFSFTTPSTSKQKIRRKISIHCTTSNSIPEAPPTSTSDNSNKKKKNTSLSDQLAPLANKTLSTVTGDQPYVLSKPKSTWVNPTKAKRSVLSPERQKRVPHSYSPQLRDLKRIAQKLNDSDSLSEAQFLASLVEIPRPLTRENALLMLNTLKPWQKTHLFLNWIKTQNLLPMETIFYNVTMKSLRFGKQFQLIEELAHQMIDNEIQLDNITYSTIISCAKKCNLSDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSVGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIESGIAPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSEYSKPDSWSYTAMLNIYGSEGDVDKAMRLFEEMCKVGVDLSVMGCTCLIQCLGKAMEFDALVRVFDISVERGIKPDDRLCGCLLSVVSLSQGSKDEDKVLGCLRQANPKLVAFIQLIDDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDVCRNKDLLERAHELLYLGTLYGLYPGLHNKTDQEWCLDVRSLSVGAALTALEEWMWTLTKIVNREGPLPGLLLAQTGTGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATREDLVSWVQSNSPSAATVT* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 228 262 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 440 470 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 333 367 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 263 296 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 476 507 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 369 401 IPR002885 -
Apr10g1688 717 TIGRFAM PPR: pentatricopeptide repeat domain 404 436 IPR002885 -
Apr10g1688 717 Pfam PPR repeat family 403 446 IPR002885 -
Apr10g1688 717 Pfam PPR repeat family 330 375 IPR002885 -
Apr10g1688 717 SUPERFAMILY HCP-like 245 470 - -
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Apr10g1688 717 ProSiteProfiles Smr domain profile. 620 703 IPR002625 -
Apr10g1688 717 Pfam Pentatricopeptide repeat domain 214 272 IPR002885 -
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Apr10g1688 717 PANTHER OS03G0856100 PROTEIN 30 710 - -
Apr10g1688 717 Gene3D Tetratricopeptide repeat domain 419 529 IPR011990 GO:0005515
Apr10g1688 717 Gene3D Tetratricopeptide repeat domain 305 418 IPR011990 GO:0005515
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Apr10g1688 717 Gene3D Tetratricopeptide repeat domain 124 289 IPR011990 GO:0005515
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Apr10g1688 717 SMART SMR_2 617 700 IPR002625 -
Apr10g1688 717 MobiDBLite consensus disorder prediction 102 121 - -
Apr10g1688 717 PANTHER OS03G0856100 PROTEIN 30 710 - -
Apr10g1688 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Apr10g1688 717 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1688 Apr-Chr10 29676575 29679050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1688 237 549 Glycosyltransferase AT1G05670 23.492 4.51e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1688 - - gmx:100780994 1230.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1688 10 29676575 29679050 Apr10g1688 10 29676575 29679050 ECH