Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1683 ATGGGGAAACAGGAGCGAGTGTTGTTTGCGGCGTTGGAATCATGCAACGGCCTCCAACAGTGGGACAAACTTAACGCGCAACTCATCGTTTCTAACCTCTCACAACACCCTCTCTTCGCCACCACCGCCATCAAGAAACTCTCTTCCCACGCGCTCACACTCCCACGCGCCATTTCCCTCTTCCGCCATCTCCATCACCCCGACGCCTTCCTCTCCAACACCATCATCCGAGCCCACGCGCGCATAGACGATTTCCCCTCCGCTCTCCGTTTTTACTATCATCACATGCTCGCTCGTTCTGTTCCCCCAAATCATTACACTTTCCCCCTCTTAATCAAACTTTGCACCGAAATCGGGTCGACCCTTGAAGGCCAAAAGGGTCATGCCCGAATTATTAAATTCGGGTTTGACTCTGATTTGTTTGTGCGGAACTCGCTGATTCGGATGTACTCTGTTTTTGGGGGAATTGGTTATGCCCGGTTGCTGTTTGATGAAAGTTGTGTGTTGGATTTGGTTAGTTATAACTCCATGGTAGATGGGTATGTGAAGAATGGGGATATTGGTGCTGCTCGTAAACTGTTTGATGAAATGCCTGTGAGGGATTTTTTTAGTTGGAATTGTATGATTGCGGGGTATGTGGGTGTTGGGGATTTGGATGCTGCGAATGTGTTGTTTGAAGGAATGCCTGAGAGGGATGTTGTGTCTTGGAACTGTATGATTGATGGGTGTGCGAGGGTTGGGAATGTCTTTCTGGCTGTTGAGTTTTTTGATCGAATGCCTGTGGCAGTAAGGAATGTGGTTACGTGGAATTCTGTGTTGGCGCTGCACGTGAGAATGAAGAATTTTGGTGAGTGTTTAAGGATGTTTGATAAAATGATGGAAGGAAGAGAGGTGGTGCCGAATGAGGCTACCCTGGTGAGTGTCCTCACCGCATGTGCTAATTTGGGGAGGCTCAGTGTGGGAATGTGGGTTCATTCTTTTATCAAAAGTAACAACATCAAACTTGATGTCTTGCTCTTGACTTGTCTATTGACAATGTACGCAAAATGTGGGGCTATGGATTTGGCTAGGGATGTTTTTGATGAGATGCCAGTCAGAAGCATTGTATCGTGGAATGCTATGATCATGGGATATGGCTTGCATGGGAATGGTGACAAGGCTCTTGAAATGTTCTTGGAGATGGAGAAGAATGGAATGCAGCCAAATGATGCCACTTTTATCTGTGTGTTATCTGCGTGTACTCATGCTGGAATGGTCATGGAGGGTTGGTGGTATTTTGATCTCATGCGTCGAGTTTACAAAATTGAACCCAAGGTTGAACACTATGGTTGCATGGTTGATCTCCTTGCTCGAGCTGGTTTGGTGGAAAATTCAGAAGAGCTTATAAGGAAGGTCCCTGTGAAGGCTGGATCTGCATTGTGGGGAGCTCTACTTTCTGGTTGTAGTACCCACTTAGACACGGAGCTAGGAGAGATTGTAGCCAAGAGACTTGTTGAGTTAGAGCCACAGGATATCGGTCCTTATATTATGCTGTCAAATATATATGCTTCTCAAGGGAAATGGGATGATGTTGAAGGAGTGAGATTGATGATAAAAGAAAGGGGATTACAGAAAGAAGCAGCATCCAGCTTGGTTCATCTTGAAGATTTTGAATCTAAATATTTTGTTAAGAATAATTCAGGTTATAGGAAAAGGATACTGTACTCGATGTTAGGAGAATTAGGAACACAGATGAAATTTTCCTTCGGAGACTCAATTGAGAAAGATAATTTTACACCTACATAA 1785 0.4487 MGKQERVLFAALESCNGLQQWDKLNAQLIVSNLSQHPLFATTAIKKLSSHALTLPRAISLFRHLHHPDAFLSNTIIRAHARIDDFPSALRFYYHHMLARSVPPNHYTFPLLIKLCTEIGSTLEGQKGHARIIKFGFDSDLFVRNSLIRMYSVFGGIGYARLLFDESCVLDLVSYNSMVDGYVKNGDIGAARKLFDEMPVRDFFSWNCMIAGYVGVGDLDAANVLFEGMPERDVVSWNCMIDGCARVGNVFLAVEFFDRMPVAVRNVVTWNSVLALHVRMKNFGECLRMFDKMMEGREVVPNEATLVSVLTACANLGRLSVGMWVHSFIKSNNIKLDVLLLTCLLTMYAKCGAMDLARDVFDEMPVRSIVSWNAMIMGYGLHGNGDKALEMFLEMEKNGMQPNDATFICVLSACTHAGMVMEGWWYFDLMRRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRKVPVKAGSALWGALLSGCSTHLDTELGEIVAKRLVELEPQDIGPYIMLSNIYASQGKWDDVEGVRLMIKERGLQKEAASSLVHLEDFESKYFVKNNSGYRKRILYSMLGELGTQMKFSFGDSIEKDNFTPT* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1683 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Apr10g1683 594 Pfam PPR repeat 234 259 IPR002885 -
Apr10g1683 594 Pfam PPR repeat 441 464 IPR002885 -
Apr10g1683 594 Pfam PPR repeat 341 366 IPR002885 -
Apr10g1683 594 Pfam PPR repeat 203 232 IPR002885 -
Apr10g1683 594 Pfam PPR repeat 172 200 IPR002885 -
Apr10g1683 594 PANTHER OS01G0913400 PROTEIN-RELATED 10 262 - -
Apr10g1683 594 PANTHER OS01G0913400 PROTEIN-RELATED 263 585 - -
Apr10g1683 594 Gene3D Tetratricopeptide repeat domain 29 130 IPR011990 GO:0005515
Apr10g1683 594 Pfam E motif 484 543 IPR046848 -
Apr10g1683 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 300 IPR002885 -
Apr10g1683 594 Gene3D Tetratricopeptide repeat domain 320 421 IPR011990 GO:0005515
Apr10g1683 594 Gene3D Tetratricopeptide repeat domain 141 228 IPR011990 GO:0005515
Apr10g1683 594 Gene3D Tetratricopeptide repeat domain 229 319 IPR011990 GO:0005515
Apr10g1683 594 Pfam PPR repeat family 367 413 IPR002885 -
Apr10g1683 594 Pfam PPR repeat family 264 314 IPR002885 -
Apr10g1683 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Apr10g1683 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 103 IPR002885 -
Apr10g1683 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 262 IPR002885 -
Apr10g1683 594 TIGRFAM PPR: pentatricopeptide repeat domain 203 234 IPR002885 -
Apr10g1683 594 TIGRFAM PPR: pentatricopeptide repeat domain 172 202 IPR002885 -
Apr10g1683 594 TIGRFAM PPR: pentatricopeptide repeat domain 234 259 IPR002885 -
Apr10g1683 594 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Apr10g1683 594 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Apr10g1683 594 PANTHER - 10 262 - -
Apr10g1683 594 PANTHER - 263 585 - -
Apr10g1683 594 Gene3D Tetratricopeptide repeat domain 422 566 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1683 Apr-Chr10 29582791 29585139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1683 104 579 Glycoside Hydrolase AT3G49170 32.246 5.95e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1683 - - gmx:100799232 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1683 10 29582791 29585139 Apr10g1683 10 29582791 29585139 ECH