Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1681 ATGGGCAATGACAGTCAAGGGTACAAGTTGGTGTTCTTGGGGGATCAATCCGTCGGCAAAACCAGCATCATCACTCGCTTCATGTACGACAAATTCGACAACACTTATCAGGCTACGATCGGTATTGATTTTTTATCAAAAACTATGTATCTTGAAGATCGAACTGTCCGACTGCAGTTGTGGGATACTGCTGGACAGGAAAGATTTAGAAGTCTAATTCCAAGCTACATTAGGGATTCCTCTGTTGCTGTCATCGTGTATGATGTTGCAAGTCGTCAGACTTTCCTCAACACATCAAAGTGGATTGAAGAGGTACGCAGTGAAAGAGGCAGTGATGTTATTGTCGTTCTTGTTGGGAACAAAACTGACCTTGTGGATAAAAGGCAAGTCTCCACAGAGGAAGGGGAAGCAAAGGCCCGGGAGCTAAATGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGATTTAATATAAAGGCCCTCTTTAGAAAAATTGCTGCGGCATTACCTGGGATGGAAACACTATCTACCACAAAACAAGAAGATATGGTCGATGTGAACCTAAGGTCTTCTGCTAACCCAGACTCTCAACCTCAGTCTGGATGTTCTTGCTGA 612 0.433 MGNDSQGYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGEAKARELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTTKQEDMVDVNLRSSANPDSQPQSGCSC* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1681 203 PANTHER LD21953P-RELATED 7 203 - -
Apr10g1681 203 ProSiteProfiles small GTPase Ras family profile. 3 203 IPR001806 GO:0003924|GO:0005525
Apr10g1681 203 SMART rho_sub_3 10 170 IPR001806 GO:0003924|GO:0005525
Apr10g1681 203 SMART ran_sub_2 13 203 - -
Apr10g1681 203 SMART rab_sub_5 8 171 - -
Apr10g1681 203 ProSiteProfiles small GTPase Rho family profile. 1 174 - -
Apr10g1681 203 SMART ras_sub_4 5 171 - -
Apr10g1681 203 Pfam Ras family 9 167 IPR001806 GO:0003924|GO:0005525
Apr10g1681 203 ProSiteProfiles small GTPase Rab1 family profile. 3 203 - -
Apr10g1681 203 PRINTS Transforming protein P21 ras signature 8 29 - -
Apr10g1681 203 PRINTS Transforming protein P21 ras signature 31 47 - -
Apr10g1681 203 PRINTS Transforming protein P21 ras signature 49 71 - -
Apr10g1681 203 PRINTS Transforming protein P21 ras signature 111 124 - -
Apr10g1681 203 PRINTS Transforming protein P21 ras signature 146 168 - -
Apr10g1681 203 PANTHER RAS-RELATED PROTEIN RABH1B 7 203 - -
Apr10g1681 203 CDD Rab6 8 168 - -
Apr10g1681 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 181 IPR027417 -
Apr10g1681 203 TIGRFAM small_GTP: small GTP-binding protein domain 6 164 IPR005225 GO:0005525
Apr10g1681 203 Gene3D - 2 199 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1681 Apr-Chr10 29569874 29582506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1681 8 166 EF-hand Containing Proteins AT3G63150 23.636 4.28e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1681 K07893 - gmx:100527651 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1681 10 29569874 29582506 Apr10g1681 10 29569874 29582506 ECH