Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1673 ATGGCTCTAACACTTCGTTCTTCAATTTCTTTTATTAATCAGAAAGAAACCAAAGTTCTTAAAACTTGGGATGATGCCCCTGCAATAGTCAGTTTTGCAAAGTCTAAGCCATCGTTCCGTATCCGAGCAAAGAATACCATACAAGAAGCACATCACACACACGAGAACAGCTTAAATTCTGAAGTAAGGATCAACGAGATATGGGAGCAGGTGCATGCTCCATCAGTTGTTCATGATCACAATTATTCAAAGAGAGTACCTGTGTTTGTGATGCTGCCACTAGATACGGTAACAATGGGAGGGAACTTGAATAAGCCTAGAGCAATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGGGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGGCCATTGAAGTACAACTGGGAGCCCTATGCTGAGCTGGTGCAGATGGTACAAATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGAGGGAATGTCGGAGACAACTGCAGTATTCCTCTACCGCCGTGGGTGCTGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAACCCTGAGTACATCTCCTTGGGCTGTGATTCAGTTCCTGTTCTAAGAGGAAGGACCCCCCTCCAAGTTTACGCTGACTACATGAGGAGCTTTCGTGACACATTCAGAGATTACTTAGGCAGTGTTATCGTGGAAATACAAGTGGGGATGGGTCCTTGTGGAGAGCTGAGATATCCATCTTATCCAGAGACCAATGGAACATGGAGGTTTCCCGGAATTGGAGAGTTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCAGCAGCCGAGGCCATTGGAAAGAAAGAATGGGGAGGAAGTGGGCCCCATGACTCTGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAGAAGGGAAGGAACGTGGAACTCTGAATATGGACGGTTCTTTCTGGAATGGTACTCCAATAAATTGATGGAACACGGCGAGAGGATCCTTGTATCTGCCAAAGGAATATTCCAAACATCTGGGGCGAAATTATCTGGGAAAATTGCTGGAATCCACTGGCATTATAGAGCAAGGTCTCACGCAGCTGAACTAACTGCTGGCTACTATAATACACGATATAATGATGGATATCTGCCAATAGCCAGAATGCTGGCAAAGCATGGAGTCACCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCCGATTTTGCTAACTGCTCACCTGAAGGGTTAGTTCACCAGGTAAAGATGACAACAACAACAGCTAGAGCAGAACTTGCTGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTGTCAACAAGTAGGTCAGACGCTGGCAATGGATTGACTGCATTTACATATCTAAGAATGAATAAGAAGTTGTTTGAAGGTGACAATTGGAGACACCTAGTGGAATTTGTAAGAAGCATGTCTGAAGGTGGTCATAGACAAAGACTTCCAGACTCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAGGGAACTCAGAAGCACACGCAAGAGGCTGCTCTGGTGTGA 1644 0.4513 MALTLRSSISFINQKETKVLKTWDDAPAIVSFAKSKPSFRIRAKNTIQEAHHTHENSLNSEVRINEIWEQVHAPSVVHDHNYSKRVPVFVMLPLDTVTMGGNLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYAELVQMVQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSVPVLRGRTPLQVYADYMRSFRDTFRDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGSGPHDSGQYNQFPEDTGFFRREGTWNSEYGRFFLEWYSNKLMEHGERILVSAKGIFQTSGAKLSGKIAGIHWHYRARSHAAELTAGYYNTRYNDGYLPIARMLAKHGVTFNFTCMEMKDREQPDFANCSPEGLVHQVKMTTTTARAELAGENALERYDADAYAQVLSTSRSDAGNGLTAFTYLRMNKKLFEGDNWRHLVEFVRSMSEGGHRQRLPDSDSHGSDLYVGHIKGTQKHTQEAALV* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1673 547 ProSitePatterns Beta-amylase active site 1. 167 175 IPR018238 GO:0000272|GO:0016161
Apr10g1673 547 MobiDBLite consensus disorder prediction 511 531 - -
Apr10g1673 547 PRINTS Plant beta-amylase signature 245 254 IPR001371 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Plant beta-amylase signature 404 414 IPR001371 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Plant beta-amylase signature 486 500 IPR001371 GO:0000272|GO:0016161
Apr10g1673 547 SUPERFAMILY (Trans)glycosidases 83 513 IPR017853 -
Apr10g1673 547 PANTHER - 1 544 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 163 184 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 277 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 438 460 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 PANTHER BETA-AMYLASE 1 544 - -
Apr10g1673 547 Pfam Glycosyl hydrolase family 14 89 506 IPR001554 GO:0000272|GO:0016161
Apr10g1673 547 Gene3D Glycosidases 78 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1673 Apr-Chr10 29426568 29429816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1673 1 547 Glycoside Hydrolase AT4G17090 72.313 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1673 K01177 - gmx:100818063 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1673 10 29426568 29429816 Apr10g1673 10 29426568 29429816 ECH