Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g1670 | ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCCGAGATCGACGGACACATCGCCGACAATTTCCGCGCCCTATCAAATGGGTTTCAGAAGTTGGAGAAGATTAAGGATTCGAATAGAAAGAGCCGGCAGATGGAAGAGCTCACCGAGAAAATGCGAGATTGTAAACGGCTTATTAAAGAGTTCGATAAAGAGGTCAAAGTTTTGGAGAATAGCTTTGATAGAGAAACCAACAGAATGTTGAATGAGAAAAAGCAGTCAATGATCAAAGAGTTAAATTCATATGTTGCTTTGAAAAAGCAATATGCTACAGATATTGAGAATAAACGAATTGAACTCTTTGAGGGGCCCAATGAAGGTTATGCAGAAGAAAATGGCCTCCTGGCATCCTCAATGACAAATCAACAGCTAATGGATCATGGGAATCGGATGATGGATGAGACAGATCAAGCCATTGAAAGGGGAAAGAAGGTAGTACAAGAGACAATAAATGTTGGTACGGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAATTGTTAATGAGCTGGATTCAATCCATTTCTCTTTAAAGAAAGCATCTCAATTGGTGAAGGAAATCGGTAGGCAGGTTGCTACTGACAAATGTATTATGGCATTACTTTTCATTATTGTCATGGGAGTAGTTGCTATCATTATTGTGAAGATTGTGCACCCAAACAACAAAGACATTCGCGACATTCCAGGATTAGCTCCTCCAGTCAATAATAATCGAAGACTGCTTTGGAGTCACAGTGGATGA | 792 | 0.4141 | MDQLSAISEDLAEIDGHIADNFRALSNGFQKLEKIKDSNRKSRQMEELTEKMRDCKRLIKEFDKEVKVLENSFDRETNRMLNEKKQSMIKELNSYVALKKQYATDIENKRIELFEGPNEGYAEENGLLASSMTNQQLMDHGNRMMDETDQAIERGKKVVQETINVGTETAAALKAQTEQMSRIVNELDSIHFSLKKASQLVKEIGRQVATDKCIMALLFIIVMGVVAIIIVKIVHPNNKDIRDIPGLAPPVNNNRRLLWSHSG* | 264 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g1670 | 263 | SMART | tSNARE_6 | 137 | 204 | IPR000727 | - | |
| Apr10g1670 | 263 | PANTHER | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED | 1 | 250 | - | - | |
| Apr10g1670 | 263 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 139 | 203 | IPR044766 | GO:0005484|GO:0031201 | |
| Apr10g1670 | 263 | Coils | Coil | 38 | 79 | - | - | |
| Apr10g1670 | 263 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 142 | 204 | IPR000727 | - | |
| Apr10g1670 | 263 | SUPERFAMILY | SNARE fusion complex | 132 | 205 | - | - | |
| Apr10g1670 | 263 | Gene3D | - | 133 | 212 | - | - | |
| Apr10g1670 | 263 | PANTHER | NOVEL PLANT SNARE 11 | 1 | 250 | - | - | |
| Apr10g1670 | 263 | Pfam | Sec20 | 151 | 232 | IPR005606 | GO:0005484|GO:0006890 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g1670 | Apr-Chr10 | 29404889 | 29408932 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g1670 | K08494 | - | gmx:100786429 | 471.47 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr10g1670 | 10 | 29404889 | 29408932 | Apr10g1670 | 10 | 29404889 | 29408932 | ECH |