Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1592 ATGGGAACTCGAACAAATTTTTACAAGAACCCTTCAATCTCATACAAAAAGCACTTCAGCCTCTCCTCCGTTCTTCAGAATCTCCAAGCTTACAACATCGCCACCGGCCATGTTCCTCCCGCCGATACACGGCATCCCCCTCATGCCTCCTCCTGCAAACGTCGCCGGAATCGCCAGCCACCGCATTCCCCTCACGATGACAGTAACGATGATCCTTTCTCTATGTCACATCACGATTATATCCAAAAGAGAAGGAAAGAAGTCGATTCTTCTCAGAATCACGATCGCATTGAGTTGACTGAAGATGTTTTGGGAAACCCTGATTCTGCTGCCCCTTTGGTGGATTATGCAAGTGATGAAGATATTACTTCAAAATGTGAACAAAATCATCATCTACCAAATTCTGGTCACAAAAAAGAATTTGATGGTGTCAAAAGCAGAAATGAGCAGCGATTTCCTGTCTCTGGGGAACCTGTTTGTATCATATGTGGAAGATACGGTGAATATATATGTAATGAGACAGATGATGATGTCTGTAGCATGGAGTGTAAAAGTGAACTTCTGGAAATTCTTAAACTCAATGAGGGATCCTCCCATGATCAAGTTAGAGATCTGTCCTCATCTGGAGGTAGTGATGCCTTATCAACTCCAGTCTTTGGTGATGATACCTGGGATTATGATCTACATCGCTGGTCAAAGAAGAGATGTAGTCTTTCTACTTATGAATGTTGGAAATGTCAAAAACCTGGCCACCTGGCCGAAGATTGTCTAATAAAGAGTTGCAGTCAGATCACAGCTGGAAGTAATGGATCTAGTTCCATCCCAAAGGATCTTGTTCAATTGTATAGAAGATGCCACCAGATTGGTAGAGACTTGTTGGCTGCTAACTGTAATGCGTGCCATAGATCATCAAATTTGGCAACGTGCCTTGATTGTAGCATTGTCCTTTGTGATGGGGCAGGTCACTTGGATGAGCATGTACGAGCACACCCTTCCCATCAAAAATATTACTCGCACAAGCTTAAACGTCTGGTTAAATGCTGCAAGTCAACATGCAAGGTCACTGAAATCAAGGATCTCTTGGTTTGCCATTATTGCTTTGATAAAGCCTTTGAAAAGTTCTATGACATGTATACTGCAACATGGAAAGGAGCCGGGCTTTCAATCATATGGGGTTCTATATGCTGTGAAGACCACTTCACCTGGCACAGGATGAATTGTTTGAATGCCGATGTGGAAGAAAGTGCGTACATTATAAAAAGCAATGGCCATAAAAGCAAACGTACTCAACTTAGTGACTTCATTTTTTGA 1311 0.4249 MGTRTNFYKNPSISYKKHFSLSSVLQNLQAYNIATGHVPPADTRHPPHASSCKRRRNRQPPHSPHDDSNDDPFSMSHHDYIQKRRKEVDSSQNHDRIELTEDVLGNPDSAAPLVDYASDEDITSKCEQNHHLPNSGHKKEFDGVKSRNEQRFPVSGEPVCIICGRYGEYICNETDDDVCSMECKSELLEILKLNEGSSHDQVRDLSSSGGSDALSTPVFGDDTWDYDLHRWSKKRCSLSTYECWKCQKPGHLAEDCLIKSCSQITAGSNGSSSIPKDLVQLYRRCHQIGRDLLAANCNACHRSSNLATCLDCSIVLCDGAGHLDEHVRAHPSHQKYYSHKLKRLVKCCKSTCKVTEIKDLLVCHYCFDKAFEKFYDMYTATWKGAGLSIIWGSICCEDHFTWHRMNCLNADVEESAYIIKSNGHKSKRTQLSDFIF* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1592 436 MobiDBLite consensus disorder prediction 126 148 - -
Apr10g1592 436 MobiDBLite consensus disorder prediction 60 76 - -
Apr10g1592 436 Gene3D - 141 198 - -
Apr10g1592 436 ProSiteProfiles Zinc finger CCHC-type profile. 243 256 IPR001878 GO:0003676|GO:0008270
Apr10g1592 436 SMART c2hcfinal6 242 258 IPR001878 GO:0003676|GO:0008270
Apr10g1592 436 MobiDBLite consensus disorder prediction 126 147 - -
Apr10g1592 436 Pfam HIT zinc finger 158 184 IPR007529 -
Apr10g1592 436 MobiDBLite consensus disorder prediction 36 76 - -
Apr10g1592 436 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 436 - -
Apr10g1592 436 SUPERFAMILY Retrovirus zinc finger-like domains 228 256 IPR036875 GO:0003676|GO:0008270
Apr10g1592 436 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN ISOFORM 4 1 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1592 Apr-Chr10 28461765 28468633 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1592 - - gmx:100814892 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1592 10 28461765 28468633 Apr10g1592 10 28461765 28468633 ECH