Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1574 ATGTACCAATGTGTGCCCAAACACATGTCACATTGTCCCATTCACTTCACAGCTTTTACCCCACACTGTTTTCTCACTTCACAGCTCTACCTCTGTTCTGCCAAGTCACACATCGTTTCGTTTTTCATCATGGCAAGCCACATGCCATTGTTACCCTTACCCACTTCTTCTGATGACTCTTCTCACCGTCGCAAACACCGCAAGGATCTGCTTTTCATCGTTTGCGCCTTCATTTTGCTTTTGTCCATCGTCGCCTTCTGTGGCTACAGGGCCTCCAACGTGCCTCCTCATGCTGACGTGGCATCGTCGACGACAACTAATGACCCCACAGCGGTGCCTTCCTCGAAATGGTACCCGGTTTCGCGTGGGGTTTCTTCTGGGGTGTCGGAGAAGTCGTCCAGTATGTTATTCGGCGTTGAAGATGGACCCTCTGAAGCTTTTCCTTGGGACAATAGCATGTTGTCGTGGCAGAGAACTGCTTTTCATTTTCAGCCAGAGAAGAACTGGATGAACGATCCCAATGGTCCTATGTACTACAAGGGATGGTATCACTTTTTCTACCAGTACAATCCAAACGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCGGTGTCAAGGGACATGATCCATTGGCTTCACCTTCCACTGGCAATGGTAGCAGATCAATGGTATGATGTGCAAGGTGTGTGGACAGGTTCTGCCACCATCTTACCCGATGGTCAAATCATCATGTTATACACTGGTTCCACCAACGAGTCGGTGCAAGTTCAGAACCTTGCATATCCAGCAGACCCTTCTGACCCGCTTCTTGTGGATTGGATCAAACACCCCGGAAACCCGGTTCTCTTCCCACCACCTGGCATCGGTGCCAAGGACTTTCGTGACCCAACAACCGCTTGGTTAACCTCTGAAGGGAAGTGGCGCATCACCATAGGGTCTAAGCTTAACAAAACTGGCATTGCCTTGGTTTATGACACTGAGGACTTCAAGACCTACCAGCTTAAGAAAGGGTTGCTTCGTGCTGTCCCAGGCACTGGCATGTGGGAGTGTGTGGACTTCTTCCCTGTGTCAAAGAAGGCTGAAAATGGCTTGGATACTTCTGTTAATGGTGCTCAGGTGAAGCATGTTATGAAAGTTAGCCTCGATGATGATAGACATGATTACTATTCAATTGGGAGTTACGATGAAAAGAAGGCTTCGTTCATACCGGATGACGCTAAGAATGATGTTGGTATTGGACTTAGATATGACTATGGTATATTCTATGCTTCCAAGACATTTTATGATCAGAGTAAGCAAAGGAGATTGTTGTGGGGTTGGATTGGAGAGTCTGACAGTGAATATGCTGATGTGGCCAAAGGTTGGGCTTCAGTTCAGAGTATTCCAAGAACGGTGAAGTTTGATAAGAAGACAGGCAGCAACTTGCTTCAATGGCCTGTTGCTGAGGTGGAGAGTTTGAGATTGAGAAGTGATGAATTTAACAATTTGAAGGCTAAGCCAGGTTCAGTGGTATCACTAAATATAGAAACAGCCACGCAGTTGGACATTGTTGCTGAGTTTGAAATAGATAAGGAGGCCCTGGAGAAAACAGATCAATCCAATGAGGAGTACACGTGCAGCAGCAGTGGGGGAGCTGCAAAACGTGGTGCCTTAGGACCTTTTGGTCTTCTGGTTCTGGCTGATGAAGGACTTTCTGAATATACTCCTGTGTACTTTTATGTCATCAGAGGAAGCAATGGAGATCTTACGACTTCCTTTTGCTCTGACCAATCAAGGTCATCTGTGGCAAATGATGTTCATAAGCAAACCTTTGGAAGCTTTGTCCCAGTACTTAAAGGAGAAAAGTTGTCCTTAAGGATCCTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGAACGTGTGTGACATCCCGGGTTTATCCAACAAAGGCAATCTATGGAGCTGCTAGATTGTTCTTGTTCAACAATGCTACTGAGGCCACTGTGACAGCCTCACTCAAAGTTTGGCAGATGAATTCAGCATTTATACGCCCATTCCACCCTGATCAGAAGACTTACAAAATTGGAACCCAATAA 2088 0.4646 MYQCVPKHMSHCPIHFTAFTPHCFLTSQLYLCSAKSHIVSFFIMASHMPLLPLPTSSDDSSHRRKHRKDLLFIVCAFILLLSIVAFCGYRASNVPPHADVASSTTTNDPTAVPSSKWYPVSRGVSSGVSEKSSSMLFGVEDGPSEAFPWDNSMLSWQRTAFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDVQGVWTGSATILPDGQIIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKHPGNPVLFPPPGIGAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTEDFKTYQLKKGLLRAVPGTGMWECVDFFPVSKKAENGLDTSVNGAQVKHVMKVSLDDDRHDYYSIGSYDEKKASFIPDDAKNDVGIGLRYDYGIFYASKTFYDQSKQRRLLWGWIGESDSEYADVAKGWASVQSIPRTVKFDKKTGSNLLQWPVAEVESLRLRSDEFNNLKAKPGSVVSLNIETATQLDIVAEFEIDKEALEKTDQSNEEYTCSSSGGAAKRGALGPFGLLVLADEGLSEYTPVYFYVIRGSNGDLTTSFCSDQSRSSVANDVHKQTFGSFVPVLKGEKLSLRILVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASLKVWQMNSAFIRPFHPDQKTYKIGTQ* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1574 695 ProSitePatterns Glycosyl hydrolases family 32 active site. 162 175 IPR018053 GO:0004553|GO:0005975
Apr10g1574 695 Gene3D Glycosyl hydrolase domain; family 43 166 491 IPR023296 -
Apr10g1574 695 CDD GH32_Fruct1-like 168 466 - -
Apr10g1574 695 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 62 684 - -
Apr10g1574 695 Pfam Beta-fructofuranosidase, N-terminal domain 52 154 IPR021792 GO:0004564
Apr10g1574 695 Pfam Glycosyl hydrolases family 32 C terminal 483 674 IPR013189 -
Apr10g1574 695 Pfam Glycosyl hydrolases family 32 N-terminal domain 162 480 IPR013148 -
Apr10g1574 695 SUPERFAMILY Arabinanase/levansucrase/invertase 155 481 IPR023296 -
Apr10g1574 695 Gene3D - 492 675 - -
Apr10g1574 695 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 62 684 - -
Apr10g1574 695 SMART glyco_32 162 635 IPR001362 GO:0004553|GO:0005975
Apr10g1574 695 SUPERFAMILY Concanavalin A-like lectins/glucanases 480 679 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1574 Apr-Chr10 28204846 28209122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1574 51 683 Glycoside Hydrolase AT1G12240 64.019 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1574 K01193 - gmx:100788844 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1574 10 28204846 28209122 Apr10g1574 10 28204846 28209122 ECH
Apr7g0670 7 13452289 13456322 Apr10g1574 10 28204846 28209122 PCT