Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1451 ATGTTGCAACCTTTCACTACTTGCTTCACCTTTCTTAATAGGAAGGCCAAATTCTACATTAACAAGCCAAGAATCATGGATATAATAAGTGTATGCTGCAAAAGACGACGACCCAACAAAAGATTCTCTTCTAGTTCTGACTATTCATGCTCCTCTTTCCTTCACATGGAGGTATCTACCCAATTTCAACAAGTTTTCAGGCTTATTGACACTAATGGAGATGGAAAGATATCAATCACTGAGCTCAGTGAAGTGCTTTCATGCCTTGGATACAACAAGTACACAGCTGCTAAAGAAGCTGAAGGCATAGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAAAGAAGAAGAAGAAAATATTGCAAGTGGCATGGAGCATGATGATAACCTCATGGATGCTTTTCTTGTCTTTGACACTGACAAGAATGGCCTAATCTCAGCTAAGGATTTGCAAAGAGTTTTGCTTAATCTAGGATGTGTTGATTGTAGTCTAAGAGAGTGCAAGCTTATGATCAAAGGGTTTGATAAGAATGGAGATGGGTTTGTGGATTTTGAAGAATTTCGATCCATGATGCAAAAAGGGCTTGCCACTTAG 627 0.3955 MLQPFTTCFTFLNRKAKFYINKPRIMDIISVCCKRRRPNKRFSSSSDYSCSSFLHMEVSTQFQQVFRLIDTNGDGKISITELSEVLSCLGYNKYTAAKEAEGIVRVLDFNGDGFVDLDEFMVVMKEEEENIASGMEHDDNLMDAFLVFDTDKNGLISAKDLQRVLLNLGCVDCSLRECKLMIKGFDKNGDGFVDFEEFRSMMQKGLAT* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1451 208 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Apr10g1451 208 SUPERFAMILY EF-hand 58 203 IPR011992 -
Apr10g1451 208 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
Apr10g1451 208 Gene3D - 136 206 - -
Apr10g1451 208 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Apr10g1451 208 CDD EFh 61 125 IPR002048 GO:0005509
Apr10g1451 208 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 46 205 - -
Apr10g1451 208 Gene3D - 34 135 - -
Apr10g1451 208 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Apr10g1451 208 Pfam EF-hand domain pair 61 125 IPR002048 GO:0005509
Apr10g1451 208 Pfam EF-hand domain pair 139 203 IPR002048 GO:0005509
Apr10g1451 208 ProSitePatterns EF-hand calcium-binding domain. 149 161 IPR018247 -
Apr10g1451 208 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Apr10g1451 208 CDD EFh 141 203 IPR002048 GO:0005509
Apr10g1451 208 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Apr10g1451 208 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
Apr10g1451 208 PANTHER CALCIUM BINDING PROTEIN 46 205 - -
Apr10g1451 208 SMART efh_1 177 205 IPR002048 GO:0005509
Apr10g1451 208 SMART efh_1 140 168 IPR002048 GO:0005509
Apr10g1451 208 SMART efh_1 99 127 IPR002048 GO:0005509
Apr10g1451 208 SMART efh_1 61 89 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1451 Apr-Chr10 26909611 26910349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1451 61 205 EF-hand Containing Proteins AT1G24620 43.243 2.65e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1451 - - gmx:100799475 331.257