Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1445 ATGTTACACTCTCAACTACCTTTCAATACCCTCCATAAATTGCCGTCACAATTATTATTCAAAATTGGCTCCAAACTGTTCCACACACTCAAACATGAACACCACCTGTTTGACAATATTTCCCACCAAAATGTTGCCTCAGTTAACCGTTCCATGCTTACCCACATGGACAAAAACCTTCCTTTTCAAGCTCTTGCCACATTCACGAAGTATTTTCCTGAACATGTTGACGAGGTTACTGTTGCCTTGTCCCTCAAGGCATGTCAAGGAGAGTTAAAACTGGGGTGTCAGATCCATGGATTGGTCGTGTCTAGCGGGTTTGTTTCACGTGTCACGGTATCAAATTCTCTCATGAAAATGTACTGCAAGTCCGGCAATTTTGGAAAGGCTAAGCATGTTTTTGAGAATTTGAGTCATCCTGATATAGTTTCTTGGAATACCATTCTTTCAGGGTTTGGGAAGAGTGTGGATGCGTTGTGCTTTGCGCGTTCTATGCGTTCTTGTGGGATAGAATTTGATCCGGTAACATACACTACTGCTCTTTCCTTTTGTTGGGATGATCTTGGGTTTTCCTTTGGGTGGCAATTGCATTCCCTTGTTATTAAATGTGGATTTGGTTGTGAAGTTTTTATAGGAAATGCACTTATAACCATGTATTCAAGGTGGGGGACATTAAATGAGGCTAGGAAAGTGTTTGATGGAATGCCCAGAAGAGATCTGGTTTCGTGGGGTGCAATGCTATCGGGCTATGCTCAAGAGGGGGAATGTTATGGGTTGGAAGCGGTTTCATTGTTTGTTGACATGGTAAGAAAAGGTATGTTGCTTGACCATGTTTCACTTACAGCTGCAGTTTCAGCTTGTGGTCATATGAAAAATTTAGAGCTAGGGAGGCAGATACATGGTTTGACCCAAAAAGTGGGATATGGAACACATGTTTCAGTTTGCAATGTTTTGATGTCAACTTATTCAAAATGTGAGGTCTGTAGAGATGCAAAAGCTGTCTTTCAGCACATTATTAATAGAAATGTAATCTCTTGGACAACAATGATTTCTATTGATGAAGAAGATGCAGTGTCTCTCTTCAATTCTATGAGAATTGATGGTGTGTATCCAAATAATGTTACATTTATAGGATTAATACATGCTATAACAATAAGGAATCTAGTGACAGAAGGTCTAATGATTCATGGGTTATGCATAAAAAGCTGCTTTTTGTCAGAACAAAATGTTTCCAATAGTCTTATCACTATGTATGCCAAATTTGAGTCCATTCAAGAATCAAAGAAGATTTTTGACGAGCTTAACTGTCGAGAAACAATATCATGGAATGCATTAATTTCAGGGTATGCTCAAAATGACTTGTGTAAAGAGGCTTTCCTCACATTTTTGTCTGCAGTAAAGGAGATAAAGCCCAACCAATACACATTCGGTAGTGTCTTAAATGCTATTGCTGCTGCTGAGGATATATCTTTGAAGCATGGGCAACGTTGTCATTCTCACTTGCTCAAACTTGGTTTAAGCACTGACCCAATTGTTTCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAGTATAAGCGAGTCTCAAAGAGTGTTCAACGAGACACCTGAAAGAACCAAGTTTGCTTGGACAGCAATTATATCTGCCTATGCCCGGCATGGAGACTATGAGTCAGTGATGAGTTTGTTTACAGAAATGGAGAGGGAAGGAAGCAGTCCTGACTCCATCACTTTCCTGTCTGTTTTAGCAGCATGTTGTAGAAAGGGAATGGTTGACACAGGCCAAAGAATCTTTGACTCTATGGTGAAAAAACATTCGATTGAGCCAACTCCTGAGCATTATTCTATTATGGTGGACATGATGGGCCGTGCTGGACAACTAGATGAAGCAGAAGAGTTGATGCAACAGATTCCAGGAGGTCCTGGATTGTCTGTGTTGCAAAGTTTGCTTGGCTCTTGTAGATTACATGGGAATGTGGAGATGGCTGAGAAGGTTGTTGATAGTTTGATAGAAATGGACCCTGCTAGTTCAGGTCCATATGTGTTAATGGCAAACTTATATGCTGAGAAAGGGAGGTGGGAGAAAGTTGCTGAAGTGAGAAAAGGGATGAGAGGAAAGGGTGTAAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTAGCTAATGTTGACTCCTTGTATTTGCATAGTTTCTCCTCTGGGGATAAATCACACCCAGAGTCTGAGAATATTTGCAGAATGGCAGAGTTTTTGGGATTGCAAATGAGATTTTTGAAAGAGAGAAGAGAGAGGGAAAGAGAGTTGTATCATGAGTAA 2316 0.4067 MLHSQLPFNTLHKLPSQLLFKIGSKLFHTLKHEHHLFDNISHQNVASVNRSMLTHMDKNLPFQALATFTKYFPEHVDEVTVALSLKACQGELKLGCQIHGLVVSSGFVSRVTVSNSLMKMYCKSGNFGKAKHVFENLSHPDIVSWNTILSGFGKSVDALCFARSMRSCGIEFDPVTYTTALSFCWDDLGFSFGWQLHSLVIKCGFGCEVFIGNALITMYSRWGTLNEARKVFDGMPRRDLVSWGAMLSGYAQEGECYGLEAVSLFVDMVRKGMLLDHVSLTAAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVCRDAKAVFQHIINRNVISWTTMISIDEEDAVSLFNSMRIDGVYPNNVTFIGLIHAITIRNLVTEGLMIHGLCIKSCFLSEQNVSNSLITMYAKFESIQESKKIFDELNCRETISWNALISGYAQNDLCKEAFLTFLSAVKEIKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLLKLGLSTDPIVSGALLDMYGKRGSISESQRVFNETPERTKFAWTAIISAYARHGDYESVMSLFTEMEREGSSPDSITFLSVLAACCRKGMVDTGQRIFDSMVKKHSIEPTPEHYSIMVDMMGRAGQLDEAEELMQQIPGGPGLSVLQSLLGSCRLHGNVEMAEKVVDSLIEMDPASSGPYVLMANLYAEKGRWEKVAEVRKGMRGKGVKKEVGFSWVDVANVDSLYLHSFSSGDKSHPESENICRMAEFLGLQMRFLKERRERERELYHE* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1445 771 Gene3D Tetratricopeptide repeat domain 353 500 IPR011990 GO:0005515
Apr10g1445 771 Gene3D Tetratricopeptide repeat domain 63 186 IPR011990 GO:0005515
Apr10g1445 771 Gene3D Tetratricopeptide repeat domain 515 738 IPR011990 GO:0005515
Apr10g1445 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Apr10g1445 771 SUPERFAMILY TPR-like 517 676 IPR011990 GO:0005515
Apr10g1445 771 Pfam PPR repeat 440 462 IPR002885 -
Apr10g1445 771 Pfam PPR repeat 412 434 IPR002885 -
Apr10g1445 771 Pfam PPR repeat 115 135 IPR002885 -
Apr10g1445 771 Pfam PPR repeat 213 239 IPR002885 -
Apr10g1445 771 Pfam PPR repeat 614 637 IPR002885 -
Apr10g1445 771 Pfam PPR repeat 241 272 IPR002885 -
Apr10g1445 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 610 IPR002885 -
Apr10g1445 771 Gene3D Tetratricopeptide repeat domain 187 307 IPR011990 GO:0005515
Apr10g1445 771 PANTHER OS07G0670000 PROTEIN 27 466 - -
Apr10g1445 771 PANTHER OS07G0670000 PROTEIN 553 763 - -
Apr10g1445 771 PANTHER OS07G0670000 PROTEIN 468 566 - -
Apr10g1445 771 TIGRFAM PPR: pentatricopeptide repeat domain 577 611 IPR002885 -
Apr10g1445 771 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Apr10g1445 771 TIGRFAM PPR: pentatricopeptide repeat domain 115 136 IPR002885 -
Apr10g1445 771 Pfam E motif 657 719 IPR046848 -
Apr10g1445 771 Pfam PPR repeat family 542 588 IPR002885 -
Apr10g1445 771 PANTHER OS07G0578800 PROTEIN-RELATED 553 763 IPR045215 GO:0003723|GO:0009451
Apr10g1445 771 PANTHER OS07G0578800 PROTEIN-RELATED 468 566 IPR045215 GO:0003723|GO:0009451
Apr10g1445 771 PANTHER OS07G0578800 PROTEIN-RELATED 27 466 IPR045215 GO:0003723|GO:0009451
Apr10g1445 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1445 Apr-Chr10 26831331 26833696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1445 44 744 Glycoside Hydrolase AT3G49170 31.267 2.57e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1445 - - cam:101513383 1214.13