Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1418 ATGGCAGACACCGACATCACCACTCCGTTTCTCTCCTCCGATCACATCGTCGTCGACGTCCGCGGCAGCGCTCACCCCGCCTCCTCCGCCGCCGATGCGAATCCCTTCCGTTCGCTTGGGTGCACTGAGGAGTTTACCGTGCCGCCGCCGGCGACGGTGGACCCATTCCGCAATGACACGCCGGGGATGGAAGGGGCGTACGAGTGGTTGAAGACGGTGGTGTGTTTGCCGCTTGCGGTCGTGCGGTTGGTGCTGTTTGGGCTGTGTTTGGCGGTGGGATATGTGGCGACCAGAGTGGCGTTGGAAGGGTGGAAGGATAAGGAAAACCCTATGCCGAAGTGGAGGTGTAGGGTTATGTGGATCACTCGATTGTGTGCTAGATTCATTCTCTTCTCTTTCGGCTATCAGTGGATAAAACGGAAGGGGAGACCAGCACCAAGGGAAATTGCTCCAGTAATTGTATCCAATCATGTATCTTATGTTGAGCCTATCTTCTATTTCTATGAATTATTTCCCACCATTGTGGCGTCTGAGTCTCATGACTCCATACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCATATATGTTAACAGGTTCTTGCCATCATCAAGGAAGCAGGCTGTCAGGGAAATAAAGAGAAGGGCCTCTTGCAATAGATTTCCTCGAGTACTATTATTTCCAGAGGGAACCACAACTAATGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTTATCCCTGGATACCCTATCCAGCCTGTAGTTGTACGCTATCCTCATGTGCACTTTGACCAATCCTGGGGTAATGTTTCTTTGGGAAAGCTTATGTTCAGGATGTTCACACAATTTCACAACTTTTTTGAGGTAGAATATCTTCCCGTGATTTCACCCCTGGATGATAAGGAAACTGCTGTACATTTTCGTGAAAGGACTAGCCATGCTATTGCAACTGCAATGAATGCTTTCCAGACAGGACATTCTTATGGTGACATAATGCTTCATATGAAAGCACAAGAAGAAAAACAGGAGAATCCCTCAATTTACATGGTTGAAATGACCAAGGTGGAATCATTATTTCATATTAGCAGCTTGGAAGCAGTGGACTTTCTGGATAAATTCTTGGCTATGAATCCTGATCCCAGTGGTCGTGTTCAATATCATGACTTCTTGAGGGTTTTAAGACTTAAGGATTGCCCGCTATCTGAAAAGATATTTGCGTTCATTGATGTGGAGAAGAGTGGGACAATTACATTCAGACAGTTCTTGTATGGATCTGGACATGTCAGGAAGCAGCCAGGGTTCCATCAAGCCTGTGAAGAAGCCTTTGCTGGATGCGGTGGTGCAGTAAAACCCTACATTGTTGAACAAGAATTACAAGATTTCATCCAACCTGCCATCCCCAGCTGGAACAAGGATGGGGTTCATGAGCTTTTTATGTTATTTGATGATAATAATGATGGAAGATTTGACAAGGATGACTTTCTTTCATGCCTTAGAAGAAATCCTATCCTCTTAGCATTTTTTATACCTCAACCGCGGCACAAGGAATTGAATGCTAATGGAGTACTAGAGATAGTGTGA 1587 0.4594 MADTDITTPFLSSDHIVVDVRGSAHPASSAADANPFRSLGCTEEFTVPPPATVDPFRNDTPGMEGAYEWLKTVVCLPLAVVRLVLFGLCLAVGYVATRVALEGWKDKENPMPKWRCRVMWITRLCARFILFSFGYQWIKRKGRPAPREIAPVIVSNHVSYVEPIFYFYELFPTIVASESHDSIPFVGTIIRAMQVIYVNRFLPSSRKQAVREIKRRASCNRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVVVRYPHVHFDQSWGNVSLGKLMFRMFTQFHNFFEVEYLPVISPLDDKETAVHFRERTSHAIATAMNAFQTGHSYGDIMLHMKAQEEKQENPSIYMVEMTKVESLFHISSLEAVDFLDKFLAMNPDPSGRVQYHDFLRVLRLKDCPLSEKIFAFIDVEKSGTITFRQFLYGSGHVRKQPGFHQACEEAFAGCGGAVKPYIVEQELQDFIQPAIPSWNKDGVHELFMLFDDNNDGRFDKDDFLSCLRRNPILLAFFIPQPRHKELNANGVLEIV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1418 528 Pfam EF-hand domain 477 501 IPR002048 GO:0005509
Apr10g1418 528 SUPERFAMILY EF-hand 358 512 IPR011992 -
Apr10g1418 528 Gene3D - 344 522 - -
Apr10g1418 528 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Apr10g1418 528 PANTHER BNAA03G56890D PROTEIN 33 514 - -
Apr10g1418 528 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 33 514 - -
Apr10g1418 528 SMART efh_1 475 503 IPR002048 GO:0005509
Apr10g1418 528 SMART efh_1 402 430 IPR002048 GO:0005509
Apr10g1418 528 CDD LPLAT_LPCAT1-like 126 334 IPR045252 GO:0008374
Apr10g1418 528 Pfam Acyltransferase 149 257 IPR002123 GO:0016746
Apr10g1418 528 SMART plsc_2 151 261 IPR002123 GO:0016746
Apr10g1418 528 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 129 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1418 Apr-Chr10 26436756 26450713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1418 101 304 Acyl Lipid Metabolism Gene Families AT1G80950 32.618 1.27e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1418 K13510 - gmx:100818109 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1418 10 26436756 26450713 Apr10g1418 10 26436756 26450713 ECH