Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1367 ATGTTAGGAACAACTACACAATCCATATTTGTTCTTCTCTTTGTTTTCATATGTACCTATTTTTCATCACATTCTAATGCTTACCCTTTATCAACCCACAGTAGATGGATCATGGATGATTCCACAGGACAACGTGCCAAGTTGGTATGTGGCAATTGGGCTGGTCACCTTAAACCAATGATCCCTGAGGGTCTTGATAGAAGGCCATTGAAGGACCTTGTTACTGAGCTTGTGGAACACAGGTTCAACTGTGTTCGTCTCACGTATGCAATTTACATGTGGACACGTTATGGCCATGACAATGTGATTGACACATTTGCCTCTTTGGATGCACCAGAGGTGATTGATGGTATTGCCAAAAACAACCCTTCAGTGTTGAGCATGACACATATTCAAGCCTTTGATGCTGTGGTTCATGAACTTGGAGTTCAGAATGTGAGAGTGTTGCTTGATAACCATGTCAGTGAGCCAAAGTGGTGTTGTAATGATGATGATCAGAATGGATTTTTTCATGATAGACACTTTGATCCTCAAGAATGGGTGCATGGCCTTACTTTGGCAGCCAAACACTTCAATGGAAATCATGCTGTTGTGGCAATGAGTTTGAGGAATGAATTGCATGGTCCACGTCAAAATTTGAATGATTGGTACAAGTACATGAGTCAAGGAGCACTAGCCATCCACAAGGCAAACCCAAATGTCCTTGTGGTTATCTCAGGTTTGAACTATGATACCGAGTTAGAGTTTTTAAGGAATAGGCCATTGAAGATAGATTTGGGGAAGAAAATGGTATTTGAGACACATTTGTACTCATGGTCTGGAATTGGGACACTCAAATTGAAGGAGATTTGGACTAAGCAACCATTGAACAGGATATGTGCCAATAGCATTAAGGGGTTAGATTATAGAGTAGGGTTCCTCACCATTGGTAAGAATGCAACCCCTTTAATCTTTACAGAGTTTGGGTTCGACCAGACAGGTTCTTCAGTGGAAGACAACAGGTTCTTGACTTGCCTTCAGACCTATCTTGCTGGTAGAGATCTGGATTGGGGTTTGTGGGCATTTCAAGGTGACTACTATGTAAGAGGAGACAAAATTCAAGTTGAAGAGTCATTTGGTGTGATGGATGCCACTTGGGATCACCTTAGAGACCCAAATTTCACTGACAAGTTCCAACTTATTCAAAGGAAGAATCAAGATCCTACTTCTAAGGTCCCCATTGCATATATCTTGTACCACCCATTATCTGGTCAATGTGCCCAAGTGAATGACAAGAATGAACTTGAAGTTGGTAGTTGTGATAACCAAAACAGATGGATTTATGGTGGAAATGGGTCTCAAATCCTTTTACAAGGCTCTAAGAAGTGCTTAACTGCCTCTAGTGAAGGGCTTCCAGTTGCTGTTTCTGATGATTGCCAAAGCAAGAACAGTTCTTGGAAATCTGTATCACTGTCTAAACTTCACTTGGCGACTATGGATCAAGATGGAGAACAAATATGTTTGCAGAAGAATTCCAACTCATCCATCATTGTAACTTCAAAATGTATTTGCATAGAAGATGACTCTCTATGTCTGAATGATCCCCAGAGCCAGTGGTTCCAGCTTGTTCCCACCAATGTATAA 1623 0.4116 MLGTTTQSIFVLLFVFICTYFSSHSNAYPLSTHSRWIMDDSTGQRAKLVCGNWAGHLKPMIPEGLDRRPLKDLVTELVEHRFNCVRLTYAIYMWTRYGHDNVIDTFASLDAPEVIDGIAKNNPSVLSMTHIQAFDAVVHELGVQNVRVLLDNHVSEPKWCCNDDDQNGFFHDRHFDPQEWVHGLTLAAKHFNGNHAVVAMSLRNELHGPRQNLNDWYKYMSQGALAIHKANPNVLVVISGLNYDTELEFLRNRPLKIDLGKKMVFETHLYSWSGIGTLKLKEIWTKQPLNRICANSIKGLDYRVGFLTIGKNATPLIFTEFGFDQTGSSVEDNRFLTCLQTYLAGRDLDWGLWAFQGDYYVRGDKIQVEESFGVMDATWDHLRDPNFTDKFQLIQRKNQDPTSKVPIAYILYHPLSGQCAQVNDKNELEVGSCDNQNRWIYGGNGSQILLQGSKKCLTASSEGLPVAVSDDCQSKNSSWKSVSLSKLHLATMDQDGEQICLQKNSNSSIIVTSKCICIEDDSLCLNDPQSQWFQLVPTNV* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1367 540 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS HYDROLASE 5 540 - -
Apr10g1367 540 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 5 540 - -
Apr10g1367 540 Gene3D Glycosidases 27 396 - -
Apr10g1367 540 SUPERFAMILY Ricin B-like lectins 406 505 IPR035992 -
Apr10g1367 540 Pfam Cellulase (glycosyl hydrolase family 5) 69 355 IPR001547 GO:0004553|GO:0071704
Apr10g1367 540 SUPERFAMILY (Trans)glycosidases 27 379 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1367 Apr-Chr10 25948283 25950098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1367 27 536 Glycoside Hydrolase AT1G13130 39.147 1.02e-135 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1367 K01179 - egr:104441706 594.734