Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1340 ATGCAAAATTGCACTTTTTCCTTCCCCACTTTCTCAATCAATGCCACTCTTCCAAATTTCTCATATTTTTCGTCGACCCTTTGCCCCTCCAAGCTTCAAATAGGATTGAGTTTGACTTGTGGTTATGGTTCTTGCAAACCACTTAGGAGGAGTCGCTATGGTGGTTCTCTTGTGGTTCATTGTGTCTCCAATGGAGAAAATGATGATGATGGGTTTTACATGAGAAGATGTGTTCAGCTTGCAAGGAAAGCTATTGGGTTTACCAGCCCCAATCCGTTGGTGGGATGTGTTATTGTCAAGGATGGCAAAGTTGTTGGTGAAGGGTTCCACCCTAAAGCAGGCCAACCTCATGCTGAGGTAGTGTTTGCTCTGAGAGATGCTGGTGCTTTGGCGGAGTCTGCAACGGCTTATGTGAGCTTGGAACCTTGTAATCATTTTGGGAGGACTCCACCTTGTACTGAGGCTCTAATTGAAGCCAAAGTGAAAAAAGTTGTTGTTGGGATGGTGGATCCAAATCCCATTGTGGCCTCCAAAGGGGTGGATAGATTGAGAGACGCAGGAATTGAAGTAGCAGTTGGAGTAGAGGAAGGACTCTGCAAGAGCCTCAATGAGGCCTATATTCACCGCATGGTAACGGGAAAGCCTTTCGTTACTTTGAGGTATTCTCTTTCTGTCAATGGGAACCTTTTGAATTTACTTGGGAATGGAGTTACAGATTGTGGGGGATACTATTCAAGGCTATTACAAGAATACGATGCAGTGATACTTTCTTCTTCCGTATTCAGTGAAAATTTGTCACTACCGACATCTCAAGAAGTTGGAGCAAATCAACCAATTCGGATTATTGTACATGAAGATTCTAGTTCTTCAAATCAAATTCCACTGGGCATAAGTGAGGTTACTGACAAAGTCATAATCTTCACAGACAGTAAGTCAGCATCAGCTCCAGAAGTGGCTCAACTAGGAATTGAAACCGTAGCTCTGGATCGTATAAATCTGGAAGCAATTTTGGATTATTGCAATTCCCAAGGATTGTGCAGTGTTCTGTTAGATATTAGGGGAAGTTTTAGTGAACTTGAAGAGCTTGTTAAGGAGGGTATTAAGAAAAATTATATTAATAAATTTGTCACGGAAATTTTGCCACTTTGGAATGGATGTGCTGAGCCAGATCCTCTACAGAGACTAAAGAGCTTAGAGAAAAGAGTAGAAGTGGTAAATTTACAGTCCAAGGCCTCTGGTCAGAGTGTTGTAATCGAGGGAAATTTTAAATTTTAA 1275 0.418 MQNCTFSFPTFSINATLPNFSYFSSTLCPSKLQIGLSLTCGYGSCKPLRRSRYGGSLVVHCVSNGENDDDGFYMRRCVQLARKAIGFTSPNPLVGCVIVKDGKVVGEGFHPKAGQPHAEVVFALRDAGALAESATAYVSLEPCNHFGRTPPCTEALIEAKVKKVVVGMVDPNPIVASKGVDRLRDAGIEVAVGVEEGLCKSLNEAYIHRMVTGKPFVTLRYSLSVNGNLLNLLGNGVTDCGGYYSRLLQEYDAVILSSSVFSENLSLPTSQEVGANQPIRIIVHEDSSSSNQIPLGISEVTDKVIIFTDSKSASAPEVAQLGIETVALDRINLEAILDYCNSQGLCSVLLDIRGSFSELEELVKEGIKKNYINKFVTEILPLWNGCAEPDPLQRLKSLEKRVEVVNLQSKASGQSVVIEGNFKF* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1340 424 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 68 191 IPR002125 -
Apr10g1340 424 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 67 260 - -
Apr10g1340 424 Gene3D Cytidine Deaminase, domain 2 59 208 - -
Apr10g1340 424 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 74 366 IPR004794 GO:0008835|GO:0009231
Apr10g1340 424 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 72 168 IPR002125 -
Apr10g1340 424 CDD Riboflavin_deaminase-reductase 74 187 - -
Apr10g1340 424 Gene3D Dihydrofolate Reductase, subunit A 209 422 IPR024072 -
Apr10g1340 424 PIRSF RibD 65 424 IPR004794 GO:0008835|GO:0009231
Apr10g1340 424 SUPERFAMILY Cytidine deaminase-like 70 210 IPR016193 GO:0003824
Apr10g1340 424 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 67 260 - -
Apr10g1340 424 SUPERFAMILY Dihydrofolate reductase-like 215 418 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1340 Apr-Chr10 25725571 25728909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1340 K11752 - gmx:100786393 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1340 10 25725571 25728909 Apr10g1340 10 25725571 25728909 ECH