Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1315 ATGCTCTGCAAATTCCATTTTATAAAGCAGCTGTGTTTCCCTCCAACCCCTTATTCATTTGTCACTCAATGCACCCATTCATGGAGCAGACTCAGAGCTTCTGTGCCAATTCCTCATGAAACCCATTTCAGGGATCCTCACACTGTTCATTTGTTTTGTGCCAATGCCCTCAAAGTTTCTTCCAAAAGGGCCTTTCTTCCTGAAGGAAAACAATTACATGCCCACTTGATAAAGTTTGGATTTTGTCATGTTCTGTCCTTGCAAAATCAGATTTTGAGTGTTTATCTTAAATGCAAGGAAATTGAAGATGCAGAGAAACTGTTTGAGGAATTGCCTGTCAGAAATGTGGTGTCATGGAATATTCTAATTCGTGGTGTTGGTGGATGTGGTAATGGAAGTGACTTGAATTCACAACTGGGTTTGTCTTATTTCAAAAGGATGTTGTTGGAAATGGTGGTTCCAGATGGTACAACTTTTAATGCTCTCATTGGTGGCTGTGCTAAGTTTCATGACATTGATTTGGGTATCCAATTGCATTGCTTTGTAGTGAAACTGGGATTTGAGTTGGATTGTTTTGTTGGAAGCGCTCTGGTTGATTTATATGCAAAATGTGGTTTAGTTGAGAATGCATGGAGAGTTTTTTATGTTGTTCCAAGTAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTTTGTCTTGAATTGTTTACCAGAAGAGGCGTTTAGCTTGTTCAGCTGGATGCGGTTGGATGGTGCAAATGGGGACGAGTTCACTTTTAGCAGCCTGCTTAGTACATGTGATACTTTGGAATATTATGACTTTGGAAAGCAGGTTCATAGTCTTATTCTTAGACAGTCATATGATTCAGATGTTTTAGTGGCTAGTACATTGATCAATATGTATGCGAAAAACGAAAATATAATTGACGCGCGTAGAGTATTTGATAGGATGGTGATTCGAAATGTGGTGGCATGGAACACCATAATTGTTGGGTGTGGGAATTACGGAGACGGAAATGAGGTTATGAAACTTCTCAGAGAGATGCTTCGCGAAGGGTTTTTCCCTGATGAACTGACTATTTCCAGCACTCTTAGTTCATGTGGCTATGCCTCAGCTGTTACTGAAATAATGCAAGCTCATGCTCTTGCAGTTAAATTATCATTTCAAGAATTTTTATCTGTTGCTAATTCTTTGATTAGTGCGTACTCCAAGTGTGGTAGTATCACTAGTGCATGTAAGTGCTTCAGCTTAGCATCAGATCCTGATCTTGTTACATGGACTTCATTGATAAATGCATATGCATTTCACGGTCTTGCCTTGGAAGCAATTGAGATGTTTGATAAGATGCTATCTTATGGCATAATACCAGATCAAATTTCTTTTCTTGGCGTCCTCTCTGCTTGTGTCCATGGCGGGCTCGTCACAAGGGGTCTTCACTACTTTAGCTTAATGACCAATGTGTATCAGATTGTTCCTGATTCAGAGCACAATACTTGCCTTGTTGACCTTCTTGGACGATATGGTCTTATAAATGAGGCTTTTAAATTCATGAGGTCAATGCCAATGGAAGCTGAATCAAATACTTTGGCAGCATTTATTGGTTCTTGCAATCTCCATGCAAATATAGAACTGGCTAAATGGGCTGCAGAAAAGCTCTTCATCATAGAGCCAGAGAAGAATGTAAACTATGCAGTTTTGTCTAACATTTATGCATCCCATAGACATTGGTATGATGTGGAAAGAGTTCGAAAAATGATGGAGCATAAGGGTGATGCAAGAGTCCCTGGTTGCAGCTGGATAGAGATTGCTAATCAAGTTCATTCATTTGTATCCAATGATAAGGCACACCCTAAAGCATTAGAAATTTATGCCACATTAAAAATGCTTCTTAGACCAATGAATGAGAAAATATTGTATGAATTTGTAAAGAATGCATGA 1941 0.39 MLCKFHFIKQLCFPPTPYSFVTQCTHSWSRLRASVPIPHETHFRDPHTVHLFCANALKVSSKRAFLPEGKQLHAHLIKFGFCHVLSLQNQILSVYLKCKEIEDAEKLFEELPVRNVVSWNILIRGVGGCGNGSDLNSQLGLSYFKRMLLEMVVPDGTTFNALIGGCAKFHDIDLGIQLHCFVVKLGFELDCFVGSALVDLYAKCGLVENAWRVFYVVPSRDLVMWNVMISCFVLNCLPEEAFSLFSWMRLDGANGDEFTFSSLLSTCDTLEYYDFGKQVHSLILRQSYDSDVLVASTLINMYAKNENIIDARRVFDRMVIRNVVAWNTIIVGCGNYGDGNEVMKLLREMLREGFFPDELTISSTLSSCGYASAVTEIMQAHALAVKLSFQEFLSVANSLISAYSKCGSITSACKCFSLASDPDLVTWTSLINAYAFHGLALEAIEMFDKMLSYGIIPDQISFLGVLSACVHGGLVTRGLHYFSLMTNVYQIVPDSEHNTCLVDLLGRYGLINEAFKFMRSMPMEAESNTLAAFIGSCNLHANIELAKWAAEKLFIIEPEKNVNYAVLSNIYASHRHWYDVERVRKMMEHKGDARVPGCSWIEIANQVHSFVSNDKAHPKALEIYATLKMLLRPMNEKILYEFVKNA* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1315 646 Pfam E+ motif 607 632 IPR046849 -
Apr10g1315 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Apr10g1315 646 TIGRFAM PPR: pentatricopeptide repeat domain 296 324 IPR002885 -
Apr10g1315 646 TIGRFAM PPR: pentatricopeptide repeat domain 223 249 IPR002885 -
Apr10g1315 646 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Apr10g1315 646 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Apr10g1315 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Apr10g1315 646 Pfam PPR repeat 397 417 IPR002885 -
Apr10g1315 646 Pfam PPR repeat 195 215 IPR002885 -
Apr10g1315 646 Pfam PPR repeat 89 115 IPR002885 -
Apr10g1315 646 Pfam PPR repeat 158 186 IPR002885 -
Apr10g1315 646 Gene3D Tetratricopeptide repeat domain 393 623 IPR011990 GO:0005515
Apr10g1315 646 Pfam PPR repeat family 221 267 IPR002885 -
Apr10g1315 646 Pfam PPR repeat family 422 470 IPR002885 -
Apr10g1315 646 Pfam PPR repeat family 321 368 IPR002885 -
Apr10g1315 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Apr10g1315 646 Pfam E motif 540 602 IPR046848 -
Apr10g1315 646 Gene3D Tetratricopeptide repeat domain 274 386 IPR011990 GO:0005515
Apr10g1315 646 Gene3D Tetratricopeptide repeat domain 39 170 IPR011990 GO:0005515
Apr10g1315 646 Gene3D Tetratricopeptide repeat domain 171 273 IPR011990 GO:0005515
Apr10g1315 646 PANTHER OS07G0259400 PROTEIN 32 621 - -
Apr10g1315 646 PANTHER OS07G0578800 PROTEIN-RELATED 32 621 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1315 Apr-Chr10 25479429 25481493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1315 52 631 Glycoside Hydrolase AT3G49170 32.653 7.22e-106 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1315 - - gmx:100778378 1073.15