LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1249	ATGCCGACGGGGGAACTCCGCTACGCGCCGCCGCAGCCACCGCCGGCGAACTCGACGGTCGGGTACGAAGACGAGGCGTGGGTGTGGGCGCAGATAAAGGCCGAGGCACGGCGCGACGCGGAGTCGGAACCGGCACTTGCCAGTTACCTGTACTCGACGATTCTCTCACACTCCTCTCTGGAACGTTCCCTGTCCTTTCACCTCGGCAACAAGCTCTGTTCCTCCACTCTCCTTTCCACCCTCCTCTACGACCTCTTCCTCAACGCCTTCTCCTCCGACTCCTCACTCCGCTCCGCTGCCGTCGCCGACCTCCGCGCCGCCCGTGAACGTGATCCTGCCTGTGTCTCCTACTCTCACTGCCTCCTCAATTACAAGGGATTCCTTGCCTGCCAGGCGCACCGTGTGGCGCACCTGTTGTGGCAGCAATCGCGGCGACCGTTGGCATTGGCACTGCACTCGCGCATCGCCGATGTCTTCGCGGTGGACATTCACCCGGCAGCGAGGATCGGAAAGGGGATTCTGTTCGACCATGCCACCGGGGTGGTGGTGGGGGAGACGGCAGTGATAGGAAACAACGTGTCAATCTTGCACCATGTCACACTTGGTGGAACCGGCAAAGTTGGTGGGGACCGCCACCCCAAGATTGGGGATGGGGTGCTCATTGGTGCTGGTGCTACCATTCTGGGGAATGTTAAGATTGGGGAAGGTGCAAAGATCGGTGCTGGATCGGTGGTTTTGATCGATGTGCCGCCACGGACTACTGCAGTTGGGAACCCGGCGAGATTGGTGGGTGGGAAGGAGAAGCCTTCTAAACATGAGGATGTGCCTGGGGAGTCTATGGATCATACCTCCTTCATATCTGAGTGGTCAGATTATATCATCTGA	885	0.5955	MPTGELRYAPPQPPPANSTVGYEDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDSSLRSAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWQQSRRPLALALHSRIADVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGKEKPSKHEDVPGESMDHTSFISEWSDYII*	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1249	294	SUPERFAMILY	Trimeric LpxA-like enzymes	24	264	IPR011004	-
	Apr10g1249	294	MobiDBLite	consensus disorder prediction	259	281	-	-
	Apr10g1249	294	PANTHER	SERINE ACETYLTRANSFERASE	22	294	-	-
	Apr10g1249	294	SMART	SATase_N_2_a	28	132	IPR010493	GO:0005737\|GO:0006535\|GO:0009001
	Apr10g1249	294	Gene3D	serine acetyltransferase, domain 1	13	161	IPR042122	-
	Apr10g1249	294	TIGRFAM	cysE: serine O-acetyltransferase	102	261	IPR005881	GO:0005737\|GO:0006535\|GO:0009001
	Apr10g1249	294	Pfam	Bacterial transferase hexapeptide (six repeats)	212	245	IPR001451	-
	Apr10g1249	294	Pfam	Hexapeptide repeat of succinyl-transferase	179	195	IPR001451	-
	Apr10g1249	294	CDD	LbH_SAT	159	259	IPR045304	-
	Apr10g1249	294	Pfam	Serine acetyltransferase, N-terminal	28	132	IPR010493	GO:0005737\|GO:0006535\|GO:0009001
	Apr10g1249	294	ProSitePatterns	Hexapeptide-repeat containing-transferases signature.	221	249	IPR018357	GO:0016740
	Apr10g1249	294	Gene3D	Hexapeptide repeat proteins	162	283	-	-
	Apr10g1249	294	MobiDBLite	consensus disorder prediction	265	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1249	Apr-Chr10	24907716	24909710	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1249	28	282	Miscellaneous Gene Families	AT2G17640	56.078	4.44e-91	271

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1249	K00640		-	gmx:547632	534.643