Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1230 ATGGCATTTTGCATCTCCTTTCCCTACCAAAGCTTTATAGATAAGCTTGCTCCTTTTCATCATCTTAATCCTTGTTCTATTCATAACCCACAAACCAACATGCAACCCAAAAACCATTCGCCCTCTTCAGTTTCTCTTGCAGTGTCTGATATTCAGATGTTTTCTTCTACTCAATTTTGCTCATCTGAAGTTTCTCCATGCTTTCAACCGTTGGATAACTTGGGTGATATAAGGACTTTGAATTCTGTCAGGGAATTGCATGCCCAGATGATCAAAATGCCAAAAAATAGGAGCTTGGTTACAATGGATGGAAGCATGATGAGGAACTACTTGGAATTTGGAGATTCTATCTCAGCAACAAAGGTTTTCTTTGTTGGTTTTGCAAGGAATTATCTTCTGTGGAACTCTTTTCTGGAGGAATTTGCAAGTTTTGGAGGTGACCCACGTGAGGTTCTGGAGGTTTTTAAGGACTTGCATAAAAAAGGAGTGAACTTTGATAGCAAAGCTCTCACTGTTGTTCTGAAGATTTGTTTGGTTTTAATGGATTTGTGGATTGGTATGGAAGTTCATGCTTTTTTGGTTAAGAAAGGCTTCCATGTTGATGCGCACTTGAGTTGTGCACTGATCAATCTCTATGAGAAGTGTTGGGGCATAGATAAAGCAAATCAAGTATTTGATGAGAGTCCACTCCAAGAGAATTTCTTGTGGAATACAGTTATTATGGCAAATTTGAGGAGTGAGAGGTGGGAGAATGCCTTAGAACTGTTCCGTAGAATGCAATCAGCTTCTGCTAGAGTCACTGATGGCAACATTGTCAAGCTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGCTATAAGACTTGGACTAGTGTCAAATACCTCAATTTGCAATTCTGTAATTAGCATGTACTCTAGAAACAATAAACTTGAACTAGCTAGAGCAGTTTTTGATTCAATGGAAGATCGCGACTTATCATCTTGGAATGCAATTATTTCGAGTTATGCAGCTAGTTGTTGTTTGAATGATGCCTGTGATATCTTTCAACAAATGGAGTCTTCCAGCATTAAACCAGACATAATAACTTGGAATTCGCTTTTATCTGGACATCTTCTTCAGGGGTCATATGAAATGGTTCTCACCAATTTTCGGAGCCTGCAACGTGCAGGCTTCAAACCAGATTCATGTTCAATAACAAGTGCAATACAAGCAGTTATTGAATTGGGTTCCTTTAATTTAGGGAAAGAAATTCATGGTTACATAATGAGAAGTAAGCTTGATTATGATGTCTTTGTTTGTACTTCATTGGTGGATATGTATATAAAAAATGATTGCTTAGATAAAGCTAAAGCAGTGTTCCATCAGTCAAAGAACAAAAATATTTGTGCTTGGAATTCATTGATATCAGGGTACTCCTTCAAGGGCCTATTCAATGTTGCTGAGAAACTGTTGAACCAGATGGAGGAGGAAGGGATAAAACCTGATTTGGTGACATGGAATAGTTTGATTTCAGGTTATTCAATGTGGGGCTGTGGCGAGGAAGCTTTGGCTGTGATCAATCGGATCAAGAGTTTGGGATTTACTCCTAACGTGGTGTCATGGACTGCTATGATATCAGGCTGTTGTCAAAATGAGAAGTACATGGATGCCCTACAGATTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCAAACTCTACTACCATCTGCAGCTTACTTCGGGCATGCACGGGCCCATCACTGTTAAAGAAAGGTGAAGAGATACACTGCTTCTGTATGAGACTTGGGTTTGTGGATGACATATTTATAGCCACAGCCCTCATTGACATGTATAGTAAAGGAGGAAAATTAAAAGAAGCCCATGAGATTTTCAGGAAAATTAAGGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGATATGCTATTTATGGCCATGGGGAAGAGGTAATGAATCTTTTTGACAACATGTGCAAAATAGGTATCAGACCTGATGCTATAACCTTCACAGCTCTTCTCTCTGGCTGCAAAAATTCAGGTTTAGTTATGGAAGGGTGGAAGTACTTTGACAGTATGAGGACAGATTACAACATTATTCCTACAATTGAGCACTACTCTTGCATGGTAGACCTTCTTGGAAAAGCTGGTTTTCTTGATGAAGCTTTGGATTTCATCCAAAACATGCCGTTAAAGCCAGATGCTAGTATTTGGGGTGCTCTTCTTACATCCTGCAGAATTCACAAAGACATGCTAGCAGAGATTGCAGCAAGGAATCTTTTCAAGTTGGAACCATATAATTCTGCTAACTATGTGATGATGATGAATATGTATTCCTCACTTGACAGATGGGAGGATGTGGAGCGCCTTAAAGACTCAATGACAGCATTGGGGGTGAAAATCCCAAATGTCTGGAGTTGGACACAAGTTAATCAGACTATTCATGTGTTCTCCACAGAAGGGAAATCACATCCAGAAGAAGGGGAAGTATATTTTGAGTTATATCAATTAGTTTCGGAAATACGAAAGCTGGGATATGTACCTGATATTAGTTGTGTATATCAGAACATTGATAACAGTGAGAAGGAGAAGGTTGTACTCAGTCACACTGAGAAGTTGGCTATGACATATGGACTAATGAAAACTAAAGGTGGATCACCAATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGATTGTCATACAGCAGCTAAGTACATTTCTTTGGCTCGAAATTGTGAGATTTTCCTAAGAGACGGTGGTCGTTTTCACCATTTCACGAATGGAAAATGCTCATGTAATGATCGTTGGTAA 2841 0.3918 MAFCISFPYQSFIDKLAPFHHLNPCSIHNPQTNMQPKNHSPSSVSLAVSDIQMFSSTQFCSSEVSPCFQPLDNLGDIRTLNSVRELHAQMIKMPKNRSLVTMDGSMMRNYLEFGDSISATKVFFVGFARNYLLWNSFLEEFASFGGDPREVLEVFKDLHKKGVNFDSKALTVVLKICLVLMDLWIGMEVHAFLVKKGFHVDAHLSCALINLYEKCWGIDKANQVFDESPLQENFLWNTVIMANLRSERWENALELFRRMQSASARVTDGNIVKLLQACGKLRALNEGKQIHGYAIRLGLVSNTSICNSVISMYSRNNKLELARAVFDSMEDRDLSSWNAIISSYAASCCLNDACDIFQQMESSSIKPDIITWNSLLSGHLLQGSYEMVLTNFRSLQRAGFKPDSCSITSAIQAVIELGSFNLGKEIHGYIMRSKLDYDVFVCTSLVDMYIKNDCLDKAKAVFHQSKNKNICAWNSLISGYSFKGLFNVAEKLLNQMEEEGIKPDLVTWNSLISGYSMWGCGEEALAVINRIKSLGFTPNVVSWTAMISGCCQNEKYMDALQIFSQMQEENVKPNSTTICSLLRACTGPSLLKKGEEIHCFCMRLGFVDDIFIATALIDMYSKGGKLKEAHEIFRKIKEKTLPCWNCMMMGYAIYGHGEEVMNLFDNMCKIGIRPDAITFTALLSGCKNSGLVMEGWKYFDSMRTDYNIIPTIEHYSCMVDLLGKAGFLDEALDFIQNMPLKPDASIWGALLTSCRIHKDMLAEIAARNLFKLEPYNSANYVMMMNMYSSLDRWEDVERLKDSMTALGVKIPNVWSWTQVNQTIHVFSTEGKSHPEEGEVYFELYQLVSEIRKLGYVPDISCVYQNIDNSEKEKVVLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICQDCHTAAKYISLARNCEIFLRDGGRFHHFTNGKCSCNDRW* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1230 946 Gene3D Tetratricopeptide repeat domain 528 594 IPR011990 GO:0005515
Apr10g1230 946 Gene3D Tetratricopeptide repeat domain 135 282 IPR011990 GO:0005515
Apr10g1230 946 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 231 934 - -
Apr10g1230 946 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 146 227 - -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 332 IPR002885 -
Apr10g1230 946 Pfam PPR repeat family 643 686 IPR002885 -
Apr10g1230 946 Pfam PPR repeat family 538 585 IPR002885 -
Apr10g1230 946 Pfam PPR repeat family 468 515 IPR002885 -
Apr10g1230 946 Pfam PPR repeat 305 333 IPR002885 -
Apr10g1230 946 Pfam PPR repeat 614 639 IPR002885 -
Apr10g1230 946 Pfam PPR repeat 714 738 IPR002885 -
Apr10g1230 946 Pfam PPR repeat 235 261 IPR002885 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 305 334 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 677 711 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 643 676 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 541 574 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 506 540 IPR002885 -
Apr10g1230 946 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Apr10g1230 946 Gene3D Tetratricopeptide repeat domain 302 418 IPR011990 GO:0005515
Apr10g1230 946 Gene3D Tetratricopeptide repeat domain 691 773 IPR011990 GO:0005515
Apr10g1230 946 Gene3D Tetratricopeptide repeat domain 419 517 IPR011990 GO:0005515
Apr10g1230 946 Gene3D Tetratricopeptide repeat domain 595 690 IPR011990 GO:0005515
Apr10g1230 946 PANTHER OS05G0586900 PROTEIN 231 934 - -
Apr10g1230 946 PANTHER OS05G0586900 PROTEIN 146 227 - -
Apr10g1230 946 Pfam Pentatricopeptide repeat domain 356 406 IPR002885 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 639 IPR002885 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Apr10g1230 946 Pfam DYW family of nucleic acid deaminases 854 946 IPR032867 GO:0008270
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Apr10g1230 946 Pfam E motif 761 811 IPR046848 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Apr10g1230 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1230 Apr-Chr10 24703752 24707569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1230 145 946 Glycoside Hydrolase AT3G49170 29.777 2.43e-128 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1230 - - gmx:100796795 1621.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1230 10 24703752 24707569 Apr10g1230 10 24703752 24707569 ECH