Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1206 ATGCCACCTCAAACGCAACCGTTTAGCGTTTTCCTCCGTGGAGCGCCGCAGAACGAGCCCTCCGACGGGAACCAGTCGCCGGCGGTGAAACGAACCGTGAAGAAAACGCTTATAGTGGAAGAGTCATCGCTAGACAACCCGGATCTGGCTCCGTTTCTTCTGAAGATGGCCCGAGAAACCATAGCTTCGGGTGAGAACCCGGAAAAGGCGTTGGATTTCGCTATTCGGGCCTCCATGTCGTATGAACGCTGTTCGGGTCCGGGTTTGGAGCTTGCCACGTGTCTCCACGTGGTTGCTGCGATTTATAGCAGTTTGGGACGGTTGGACGAGGCGGTTGAGGCTCTGGAACGGTCCATTTTGTTGCTGGATATTGAAAAAGGGTCGGATCATGGCATGGCCAAGTTTTCCGGGTATATGCAGCTTGGGGACACGTATTCCATGATTGGCCAATTGGATAGATCCATTTCGTGTTATGAATCGGGTTTAGAGGTTCAAATTGAGGTTTTGGGTAAGTCCGACCCGAGAGTTGCTGAGACTTGTAGGTACCTAGCTGAAGCCCATGTTCAAGCCATGCAATTTGATGAGGCAGAGAACTTCTGCAAGAAGAGCCTTGAAATTCATAAGGATCATTGCTCACCTGCCTCTCTTACAGAAGCGGCTGATAGGCGTCTCATGGCCCTTATATGCGAGGCAAAAGGAAATTATGAACCAGCACTTGAACACCTTGTCCTAGCTAGCATGTCAATGATAGCTAATGGACAAGACAATGAGGTTGCAGCCATTGATGTTAGCATTGGAGATATTTACTTGTCTCTCTGTCGTTTCGACGAGGCTGTTTTCGCCTATCAGAAAGCACTAACAGTGTTCAAATCCACCAAGGGTGAAAGTCACAGTTCTGTGGCATTAGTGTACATTCGCCTAGCTGACCTTTACTACAAGACAGGGAAATTAAGAGAGTCAAAATCCTATTGTGAAAATGCCTTAAGAATATACAGTAAACCCGTGCCAGGAACAACGGCCGGAGAGATTGCGAGTGGATTGACTGAAATCTCTGCTATCTATGAAGCTCTAAGTGAGCCTGAGGAGGCACTGAAGCTGTTGCAGAAAGCAGTGAAGTTGTTGGAGGATATCCCTGGACAATATAGGACAGTAGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTACATGGTTGGGAGGTATATGGATGCTTTTAAATCTTTTGACAATGCTATCACCAAGCTTAGAGCCAGTGGTGAGAAGAAATCTGCGTTTTTTGGAGTTGTATTGAACCAGATGGGCCTTGCATGCGTGCAACTGTATAAAATAGCAGATGCTGCCATGCATTTTGAAGAAGCAAGAGAGATATTGGAGAGAGTGTGTGGAACATATCATTTGGACACTCTTGGAGTGTACAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTGAGATATTGGAGTACATACTAAAGATGAGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAAAAAACGGCTATTTGAGCTTTTGAAAGAAGCAGGAAGGGTTTGGAATAGAAAGGGAAAATCACTTGAAAACCTTATAGATTCCAATTCCTTAAAGATGAAGAAGGAAGGAAAAAGGAGATGGGGTGCATTTAGTTTGAGAGCATAA 1686 0.4561 MPPQTQPFSVFLRGAPQNEPSDGNQSPAVKRTVKKTLIVEESSLDNPDLAPFLLKMARETIASGENPEKALDFAIRASMSYERCSGPGLELATCLHVVAAIYSSLGRLDEAVEALERSILLLDIEKGSDHGMAKFSGYMQLGDTYSMIGQLDRSISCYESGLEVQIEVLGKSDPRVAETCRYLAEAHVQAMQFDEAENFCKKSLEIHKDHCSPASLTEAADRRLMALICEAKGNYEPALEHLVLASMSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVYIRLADLYYKTGKLRESKSYCENALRIYSKPVPGTTAGEIASGLTEISAIYEALSEPEEALKLLQKAVKLLEDIPGQYRTVAGIEAQMGVMFYMVGRYMDAFKSFDNAITKLRASGEKKSAFFGVVLNQMGLACVQLYKIADAAMHFEEAREILERVCGTYHLDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVWNRKGKSLENLIDSNSLKMKKEGKRRWGAFSLRA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1206 561 SMART tpr_5 385 418 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 344 377 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 259 292 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 301 334 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 427 460 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 92 125 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 135 168 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 177 210 IPR019734 GO:0005515
Apr10g1206 561 SMART tpr_5 469 502 IPR019734 GO:0005515
Apr10g1206 561 MobiDBLite consensus disorder prediction 1 30 - -
Apr10g1206 561 Pfam Tetratricopeptide repeat 258 332 - -
Apr10g1206 561 Pfam Tetratricopeptide repeat 429 501 - -
Apr10g1206 561 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 24 560 - -
Apr10g1206 561 Pfam MalT-like TPR region 96 243 IPR041617 -
Apr10g1206 561 ProSiteProfiles TPR repeat profile. 469 502 IPR019734 GO:0005515
Apr10g1206 561 ProSiteProfiles TPR repeat profile. 259 292 IPR019734 GO:0005515
Apr10g1206 561 SUPERFAMILY TPR-like 92 505 IPR011990 GO:0005515
Apr10g1206 561 Gene3D Tetratricopeptide repeat domain 457 538 IPR011990 GO:0005515
Apr10g1206 561 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 24 560 - -
Apr10g1206 561 ProSiteProfiles TPR repeat profile. 344 377 IPR019734 GO:0005515
Apr10g1206 561 Gene3D Tetratricopeptide repeat domain 247 425 IPR011990 GO:0005515
Apr10g1206 561 Gene3D Tetratricopeptide repeat domain 31 246 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1206 Apr-Chr10 24406446 24410893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1206 66 304 Glycosyltransferase AT3G04240 24.000 1.51e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1206 - - gmx:100794697 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1206 10 24406446 24410893 Apr10g1206 10 24406446 24410893 ECH