Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1198 ATGGAAAGCAACCAGAACATGAAGGAAAACACCATAGGGACAGAGTTTGAGGACTTGCTGCCAGTGATGGCACAGAAGCTTGATGTGGAATCCTTTGTGTCAGAACTATGTGGGGGTTTCAAGCTTCTAGCAGACCCTGAATTGGGTTTGATCACAAGCCAAAGTTTAAGGACAAATTCAGCTCTTTTGGGTATGGAAGGTATGAGCATGGAGGATGCAGATGCTATGGTTAGACAAGGTGATCTTGATGGTGATGGCAAGCTAAATGAGACTGAATTTTGCATCCTCATGGTGAGGCTTAGCCCTGGAATGATGCAAGATGCTGAGGCATGGCTGGAGAAAGCAATTGAGGAAGAGCTCAGGAAATCCTCAACTTAG 378 0.455 MESNQNMKENTIGTEFEDLLPVMAQKLDVESFVSELCGGFKLLADPELGLITSQSLRTNSALLGMEGMSMEDADAMVRQGDLDGDGKLNETEFCILMVRLSPGMMQDAEAWLEKAIEEELRKSST* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1198 125 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Apr10g1198 125 PANTHER CALCIUM-BINDING PROTEIN KIC 1 122 IPR044205 GO:0005509
Apr10g1198 125 Pfam EF-hand domain pair 49 99 IPR002048 GO:0005509
Apr10g1198 125 SUPERFAMILY EF-hand 21 122 IPR011992 -
Apr10g1198 125 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Apr10g1198 125 Gene3D - 13 125 - -
Apr10g1198 125 PANTHER CALCIUM-BINDING PROTEIN KIC 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1198 Apr-Chr10 24302597 24303645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1198 14 120 EF-hand Containing Proteins AT2G46600 72.897 3.00e-55 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1198 K24345 - gmx:100802677 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1198 10 24302597 24303645 Apr10g1198 10 24302597 24303645 ECH