Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1195 ATGAAGCAAGTGAAGCAAATCCATGGTTACACTCTGAGAAATGGCATAGACCACACCAAAATCCTAATAGAGAAGCTACTTGAAATCCCAAACCTACACTATGCACACATGGTGTTGCAGCATTCTCCAAAGCCAACCGTTTTTCTCTACAACAAGCTCATTCAAGCCTACACCTTCCATTCCCAGTACCAATGCTTCTCGCTTTACTCTCAAATGCGCCTTCATGGCCTCCCCCCAAATCAACACACTTTCAACTTCCTCTTCTCTGCATGCACTTCCCTTTCTTCCCCTCCCATTGGTCAAATACTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGATCTCTTTGCTGCCACTGCTTTGCTTGACATGTATGCCAAAGTGGGTACTTTGGAGCTGGCACGCCAACTGTTTGAGGAAATGGCTGTGAGAGGGGTACCCACATGGAATGCTATGATGGCAGGGTATGCAAGATTTGGTGATATGGAGGGAGCATTGGGGTTGTTTAGGTTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCTGGTTACTCACAGAATAAACAGTATGAGAAGGCTTTGGGGTTGTTTCTGAGGATGGAGCAGGAGAAAAACATAATGCCCAATCAAGTAACTTTGGCAAGCATTTTGCCGGCTTGTGCAAATCTTGGGGCACTTGAGATTGGGCAGAGGGTTGAATCATATGCTAGGAAAAATGGGTTTTTTAAGAATTTATATGTGAGAAATGCTGTATTGGAGATGTATGCAAAGTGTGGTAAGATTGATTTTGCTTGGCGAGTTTTCGATGAGATTGGAAGCATGAGAACCCTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGACAATGTGAACAGGCCCTTGAGCTTTATGAACAAATGCTGGGAGAAGGATCTTCACCTGATGATGTGACATTTGTGGGGCTCCTCTTGGCATGCACTCATGGAGGCATGGTTGAAAAGGGTAGGCATATCTTCAAGTCAATGACCACAGCCTTCAACATTGTTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTCCTAGGCCGAGCCGGGCAATTGAGAGAAGCTTATAATGTCATACAAAGTTTGCCAATGAAACCGGACTCAGTAATATGGGGGGCTTTGTTGGGAGCTTGCAGCTTCCATGGTAATGTTGAGGTGGCTGAGATAGCAGCTGAGTGTCTATTTGCACTTGAGCCTTGGAATCCTGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCTGGTCAATGGGATAGAGTTTCAAAGCTTAGGAAGGTGATGAAGGGAAGCCAAATTGCTAAGGCTGCTGGACATAGTTTCCTTGAAGAGGGTGGTCAATTGCATAAGTTCATTGTGGAAGATAGATCACATCCAGAAAGCAAAGAAATTTTTGCGTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCGTTTGAATGCCATTTGGATCTTGATTTGAGCAACGAATCATAG 1533 0.4403 MKQVKQIHGYTLRNGIDHTKILIEKLLEIPNLHYAHMVLQHSPKPTVFLYNKLIQAYTFHSQYQCFSLYSQMRLHGLPPNQHTFNFLFSACTSLSSPPIGQILHTHFIKSGFEPDLFAATALLDMYAKVGTLELARQLFEEMAVRGVPTWNAMMAGYARFGDMEGALGLFRLMPSRNVVSWTTMISGYSQNKQYEKALGLFLRMEQEKNIMPNQVTLASILPACANLGALEIGQRVESYARKNGFFKNLYVRNAVLEMYAKCGKIDFAWRVFDEIGSMRTLCSWNSMIMGLAVHGQCEQALELYEQMLGEGSSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTAFNIVPKLEHYGCMVDLLGRAGQLREAYNVIQSLPMKPDSVIWGALLGACSFHGNVEVAEIAAECLFALEPWNPGNYVILSNIYASAGQWDRVSKLRKVMKGSQIAKAAGHSFLEEGGQLHKFIVEDRSHPESKEIFALLDGVYEMIKLNRSAFECHLDLDLSNES* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1195 510 Gene3D Tetratricopeptide repeat domain 24 147 IPR011990 GO:0005515
Apr10g1195 510 TIGRFAM PPR: pentatricopeptide repeat domain 179 213 IPR002885 -
Apr10g1195 510 TIGRFAM PPR: pentatricopeptide repeat domain 149 178 IPR002885 -
Apr10g1195 510 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Apr10g1195 510 Pfam E+ motif 465 485 IPR046849 -
Apr10g1195 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Apr10g1195 510 Pfam PPR repeat family 45 91 IPR002885 -
Apr10g1195 510 Pfam PPR repeat family 282 326 IPR002885 -
Apr10g1195 510 Pfam PPR repeat family 176 225 IPR002885 -
Apr10g1195 510 PANTHER OS06G0125600 PROTEIN 2 459 - -
Apr10g1195 510 Pfam E motif 397 458 IPR046848 -
Apr10g1195 510 Pfam PPR repeat 354 376 IPR002885 -
Apr10g1195 510 Pfam PPR repeat 120 147 IPR002885 -
Apr10g1195 510 Pfam PPR repeat 253 275 IPR002885 -
Apr10g1195 510 Gene3D Tetratricopeptide repeat domain 252 480 IPR011990 GO:0005515
Apr10g1195 510 Gene3D Tetratricopeptide repeat domain 148 244 IPR011990 GO:0005515
Apr10g1195 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Apr10g1195 510 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1195 Apr-Chr10 24282970 24284620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1195 5 492 Glycoside Hydrolase AT3G49170 33.266 7.22e-89 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1195 - - gmx:100790321 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1195 10 24282970 24284620 Apr10g1195 10 24282970 24284620 ECH