Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1193 ATGAACCAGGAAATGAATGGTGTTGAGGCTGAGAAGAAGGTGGAGAATGGAAATGAGAAAATGGACTATGATGTTCAGGAGAAGATAGATTATGTGTTTAAGGTAGTGGTGATAGGGGACTCAGCAGTGGGCAAGACTCAAATACTCTCAAGGTTTGCTAAGAATGAGTTCTGCTTTGACTCAAAGTCCACTATTGGAGTTGAATTTCAGACTAGGACTGTCACTATTAATGGTAAAGTCATCAAAGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTGACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGTTAGTCTATGACATAACAAAAAGGCAATCGTTTGATCATGTTGCTAGGTGGGTTGAGGAACTGCGTGCACATGCAGATAGCTCCATTGTGATCATGTTAGTAGGGAACAAAGCTGATCTTGTGGACCTGAGAATGGTGCCCACTGAAGATGCAGTGGAATTTGCTGAGGACCAGGGTCTGTTCTTCTCTGAGACTTCAGCTCTCAGTGGTGAAAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTCTCTAAAAAGGCATTGGAATGTGGCTATGGGAAGGAGAATGGTTACAACAATGCCACCACACTCAAAGGGTCAAAGATAGATATAATATCAGGTCCTGAATTGGAAATTAGTGAGATGAAAAAATTGTCTTCATGCTCTTGTTAA 735 0.4259 MNQEMNGVEAEKKVENGNEKMDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDLRMVPTEDAVEFAEDQGLFFSETSALSGENVESAFLKLLEEINRVVSKKALECGYGKENGYNNATTLKGSKIDIISGPELEISEMKKLSSCSC* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1193 244 PANTHER RAS-RELATED PROTEIN RABA3 1 244 - -
Apr10g1193 244 CDD Rab11_like 30 193 - -
Apr10g1193 244 Gene3D - 25 223 IPR027417 -
Apr10g1193 244 SMART ran_sub_2 38 226 - -
Apr10g1193 244 SMART ras_sub_4 30 196 - -
Apr10g1193 244 ProSiteProfiles small GTPase Rho family profile. 26 197 - -
Apr10g1193 244 ProSiteProfiles small GTPase Ras family profile. 27 244 IPR001806 GO:0003924|GO:0005525
Apr10g1193 244 TIGRFAM small_GTP: small GTP-binding protein domain 32 186 IPR005225 GO:0005525
Apr10g1193 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 198 IPR027417 -
Apr10g1193 244 Pfam Ras family 34 194 IPR001806 GO:0003924|GO:0005525
Apr10g1193 244 SMART rho_sub_3 35 199 IPR001806 GO:0003924|GO:0005525
Apr10g1193 244 SMART arf_sub_2 21 197 - -
Apr10g1193 244 PANTHER - 1 244 - -
Apr10g1193 244 PRINTS Transforming protein P21 ras signature 33 54 - -
Apr10g1193 244 PRINTS Transforming protein P21 ras signature 56 72 - -
Apr10g1193 244 PRINTS Transforming protein P21 ras signature 74 96 - -
Apr10g1193 244 PRINTS Transforming protein P21 ras signature 136 149 - -
Apr10g1193 244 PRINTS Transforming protein P21 ras signature 171 193 - -
Apr10g1193 244 ProSiteProfiles small GTPase Rab1 family profile. 28 234 - -
Apr10g1193 244 SMART rab_sub_5 33 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1193 Apr-Chr10 24264104 24265340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1193 K07904 - gmx:100799439 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1193 10 24264104 24265340 Apr10g1193 10 24264104 24265340 ECH
Apr4g0946 4 7684446 7686109 Apr10g1193 10 24264104 24265340 PCT