Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1170 ATGGCAACATTGACTGCTTCAAGTAACTTAGTCTCTGGAAGTTCTCATGTCCACTATGGACCAAATGCTTCATATGAGTCTAAAGCAGCATCAATGGGACTTAGATCTCTAAAGCAGACCAATACTCATAATGGGCTAAGAATTTTGAACCCGGTGGATGAGTTACTTAATAGAACCCCAATTAAAATTAATGCAGCACAAACTATGAGGATGAAGGTTCAGAACAAGAATGATAGGCCCACAGGTGTAATCATATGTGGCATGAATTTGATCTTTGTAGGAACTGAGGTTGCTCCATGGAGCAAAACTGGCGGGTTAGGAGATGTTCTTGGAGGGCTTCCACCAGCATTGGCTGGTAATGGGCATCGAGTTATGACCATTGCTCCACGTCATGATCAGTACAAAGATGCATGGGATACAAATGTTATAGTTGAGTTGAAAGTGGGAGATAGAACAGAGAAAGTTCGCTACTTCCATTGCTATAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCCATGTTTCTAGAAAAGGTCTGGGGGAAAACTGGAACCAAACTTTATGGACCTACTACAGGAGAGGATTACCAAGACAACATACTACGTTTTAGCCTGTTTTGCCAGGCAGCTTTGGAAGCACCAAGAGTTCTGAATCTTAATTGCAGTAAATATTTCTCTGGACCATATGGTGAAGATGTCCTTTTCATCGCCAATGATTGGCACACAGCCCTTCTCCCCTGCTACTTGAAAACTATGTATCAGTCAGTGAGCATCTATAAGAACGCCCGAGTCGTTTTTTGTATCCACAACATTGCTTACCAAGGAAGATTTGCATTCGCAGACTTTTCACTTCTCAATCTCCCTGACCAATTTAAAAGCTCTTTTGACTTTATTGATGGGCATGTTAAACCAGTGCTTGGGAGGAAAATCAATTGCATGAAAGCTGGAATTTTAGAATCATGCTTTGTGTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCTGGCCCAGATAAAGGAGTAGAGTTGGACAACATCCTTCGCCGAATTGTTGATCGTTTTGTTGGAATTGTGAATGGCATGGACGTTCAGGAGTGGAATCCATCCACTGACACATATATAGCTGTCACATACAATGCTTCAACAGTAATGGAAGCAAAGGCTCTTCTCAAAGAAGCCCTCCAAGCAGAAGTTGGATTGCCAGTTGACAGAAATATTCCTCTCATTGGATTTATTGGTAGGCTTGAAGAGCAAAAGGGTTCTGATATTCTTGTTGCAGCGATTCCTCAATTCATTGGGGAGAATGTTCAGATAGTAGCCCTAGGAACAGGCAAAAAACAAATGGAAAAACAGCTTCAGCAACTTGAAATATCATTCCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGAGCTGATTTTATATTGGTCCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGAACTGTACCTATTGTTGCCTCAACCGGTGGATTAGTCGACACAGTTAAAGAAGGGTTCACTGGATTTCAGATGGGTGCCTTCAATGTTGAATGTGATGCTGTGGATCCTGCGGATGTGGATGCTATAGCAAAGACTGTCAAAAGGGCCACTGCAGTGTATGGAACTCCAGCTTTTACAGAAATGATCAAGAATTGCATGGATCGAGATCTTTCATGGAAGGGACCTGCTAAGAAATGGGAAGAAATACTACTAAGCTTGGGAGTTCCTGGCAGTGAACCTGGCATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAACGTGGCAACTCCATAA 1851 0.4263 MATLTASSNLVSGSSHVHYGPNASYESKAASMGLRSLKQTNTHNGLRILNPVDELLNRTPIKINAAQTMRMKVQNKNDRPTGVIICGMNLIFVGTEVAPWSKTGGLGDVLGGLPPALAGNGHRVMTIAPRHDQYKDAWDTNVIVELKVGDRTEKVRYFHCYKRGVDRVFVDHPMFLEKVWGKTGTKLYGPTTGEDYQDNILRFSLFCQAALEAPRVLNLNCSKYFSGPYGEDVLFIANDWHTALLPCYLKTMYQSVSIYKNARVVFCIHNIAYQGRFAFADFSLLNLPDQFKSSFDFIDGHVKPVLGRKINCMKAGILESCFVLTVSPYYAQELVSGPDKGVELDNILRRIVDRFVGIVNGMDVQEWNPSTDTYIAVTYNASTVMEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILVAAIPQFIGENVQIVALGTGKKQMEKQLQQLEISFPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGAFNVECDAVDPADVDAIAKTVKRATAVYGTPAFTEMIKNCMDRDLSWKGPAKKWEEILLSLGVPGSEPGIDGEEIAPQAKENVATP* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1170 616 MobiDBLite consensus disorder prediction 595 616 - -
Apr10g1170 616 CDD GT5_Glycogen_synthase_DULL1-like 89 590 - -
Apr10g1170 616 Hamap Glycogen synthase [glgA]. 88 591 IPR011835 GO:0004373
Apr10g1170 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 616 - -
Apr10g1170 616 Gene3D Glycogen Phosphorylase B; 90 582 - -
Apr10g1170 616 Pfam Glycosyl transferases group 1 408 529 IPR001296 GO:0016757
Apr10g1170 616 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 88 589 IPR011835 GO:0004373
Apr10g1170 616 Gene3D Glycogen Phosphorylase B; 363 573 - -
Apr10g1170 616 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 78 589 - -
Apr10g1170 616 Pfam Starch synthase catalytic domain 90 349 IPR013534 -
Apr10g1170 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1170 Apr-Chr10 23927017 23930786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1170 1 616 Glycosyltransferase AT1G32900 70.388 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1170 K13679 - gmx:100037476 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1170 10 23927017 23930786 Apr10g1170 10 23927017 23930786 ECH