Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1169 ATGAGCTTTGTCCACAGCATCATGGAGCTGGACCTCCGCACGTTCCTTCCCTCAGCCACGTCCACCGACGACGAAGCCGATGAAGCACCTCACCGCACCATCGATGATATTCTCAACGACTGTGACACTTCCTCATCGTCACCCTCACCTCCTTCCTCTCCCTCAACACACACCAATTCCCTTCCCCAAAAACCCTCACAACTAAAGCCACTTCAACCCTCACCCGATTCCCTTTCTCAGGTCAAACCCGTAGAATTCCCCGATCGAACGCGCGTTTCGCGTCCATTCTCTTCTCTCTTTCACGGCGTGCGCTCCAATGCCAAGCCCGGTGCTGCGCTCGCCGCCGCCGCTGCCGCCTCTCGGTCCGTACCTACGCCGCACGCGGCCGCGATTATGTGGCGAAGGAGAGGCGCTGTTGCTAACGGTGCCGAATCGAGTTCCGTCACTGCCGTTGGCGATGATTCTGATGTTTCTTCTTCCAAAGGTGAATCAGGTGAGTATAGTGAGAAATTCGAGTCAGAGGCGAGGGGAATTGAAACTCAATCTAGTGAGAGTGTTTCTGCTGTTGGCGAACGTTTTGAGAGTGATGCGGAAATTGCAACTGATTCGAAGACTGGTAGTGCAGACAGTAACATTCAGGTGCGTAGTGATTCTGATTCTGATGCTTCTGTCGTGAGTAAGGAGAAGAGGGATTTGGATGAAGTTGATCCTGATCTTGAAAATGATATGAGTTCTGCACCATTTGATCATGATGATCATGAATTCAATGGAAAAACTAGTCTTACTTATGTTGATGGTGACGAGAGAGTTAGTGTAACGGACGCAGCTGGGGAAACAGAAGAGCTAGTGAATAATGGTGGTAGTACTATGGAAGATGTTAAGAATGACGAGAGTGTAGTTGGTGGTGACGATGGTAGTTCATTAGGCGATGTTGCTGAGCTGGTGGAAGAGACGCTAGAGGAATTGGAAAGGATAAGGGCTGCTAAGAGAGCGGAGAAAAAATTAGAGTCTTCAATGAGGCCACTTGAATTGGCTGAAGAACTGGAGAAGAGGCATGCTTCAACTGGTTTGCATTGGGAAGAGGGTGCTGCTGCCCAGCCGATGAGGCTCGAGGGTGTGCGCAGAGGGTCCACTACGTTGGGATACTTTGATGTTGATGCTGATAATGCTGTCACAAGGGTCATTTCGTCCCAAACGTTCAGGCATGAACAAGGTTTTGCCCAAGTCTTGGCAGTTCATACTAATTACATTGCAGTAGGAATGGCAAAGGGGCTCATTGTTGTAGTTCCCAGTAAATATTCCATTTATCATGCTGACAACACAGATGGAAAGATGTTGATGCTGACTGTACAAGGTGATCGGTCACATGCTCCAGTGACGTCCATGTCTTTCAATCAGCAAGGAGACCTTCTTTTAGCTGGTTACGGTGATGGTCATGTCACCCTGTGGGATGTACAGAAAGGTGTAGTGGCAAAAATTATAAGTGGCGAACATACTGCACCAGTGATACATACATTGTTTCTAGGACAGGATCCTCAAAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTACACAGTATCTCAGTGGTCCCTTTGCTGAATAGATTCTCTATCAAAACTCAGTGTCTTCTTGATGGGCAAAGAACGGGCTTGGTGCTTTCAGCTTCACCACTCCTTTCTGATGACTTCAGTGGAAATGCTTCACCGTATTCCCAGGGAAACACCACAGCCTCAGCCAGCAGTATAAGCAGCATGATGGGGGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAAGGCTCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCATTGGTGGTACGACTGAGCCCTACATTGGAAGTCTATGCTCAACTTTCTAGGCCAGATGGAATTCGGGAGGGTTCCATGCCTTATACTGCATGGAAATACATGACACAAACATGTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTTGCCATTGCTTGGGAGCGGAAGGTTCAGGTTGCAAAGTTGGTCAAATCAGAATTAAAAGTATATGGAAAATGGTCTCTTGACAGTCCAGCTATCGGTCTGGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAACTGGACAACTATATTTATTTGCCAAGGATGGAACTATGATTCACCGAACAAGTTTTGCTGTAGATGGTATTGGAGGAGATGATTTAGTTTCTTACCATACTCACTTCATCAACACATTTGGAAACCCCGAGAAAGCTTATCATAACTCTGTCGCCATAAGAGGAGCTTCTATTTATATACTTGGTCCAACTCATGTTCTAGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTTGGTTTTGCGGAAAGCTGGTGATTGGATGGGTGCCTTGAACATGGCAATGACTCTCTATGATGGTCATGCTCATGGGGTTGTTGACCTTCCTAGAACCTTGGATGCTATACATGACGCCATAATGCCCTTCTTGGTGGAGTTGCTCACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAACCAAATTGGAAAACTGGACCAATCCGATGATTCAAATAGTACAAGCAATTTGGTGCATTCTGAGATAAAGGAGCAATACACCCGCGTTGGTGGTGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACAGACATTCTTTTTGATGAAATTTTCTTCAGGTTCTTGGATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATACATTTTGAAAGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATTTCATCCTTAGATTTTAATCAGGTTGTCAGATTATGCAGGGAGCATGGGCTATACAGTGCACTGGTGTATCTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAAGAGCTCTTTGCTGTCTTACAAAATAGCCCAAAGGAAAGTGCTAATGCACTTGGGTATAGAATGTTGGTTTATCTCAAGTACTGCTTTACAGGTCTTGCCTTTCCACCAGGCCATGGAACTATTCTTCCCACACGCTTACCATCTCTTAGAAAGGAGCTTGTAGAGTTTTTGTTGGAGGACTCTTGTACTCTGAAATCACAGACAGTTTCAGACTGTGTGTCCAGGCAACCCTGCCTGAATCTTTATCTTCTCTTAAAGTTAGATCCTGAAGCTACATTGGATGTCCTGAGATGTGCCTTCGTGGAAGATGCAATTTCAAATACCGACTCATCTTCAGTGGATTCAGCCAATAGACCTATCGACGAAGTAAAAAAAGGAAATGATAATGTTAATGAAACTCAAAATACTTTGGTTCAGAACACAGTTGATGCTCTCATCCAAATAATTGATATGAATATTGTTCCACCAGATACAACCTCTAATAGTGGTGATGATGAGTCGATAAAAGAGTGTCCTTCCAAGGACATAGGTTATCTGTTTGAATTTATTGCATATTATGTTGCGCTCCAAAGAGCTAAAATTTCAAAGAGTGTGTTGTGTCAAATATTGAAGTATTTGACCTCAGATAGTCAGTTTTCAACTAATGTTTCTGTTAATGCTTCAACTCCAAAAAGTAGAGAGAAGCAAGTGCTTGCCCTTTTGGAAGTACTTCCTGAGTCAGAGTGGGATGCGTCATTTGTGCTAGATCTATGTGAGAGAGCCAACTATCATCAGGTTTGTGGATTGATTCATAGTGTCAGACATGATTATGTGGTTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTGTTCATGCCTTCTCTTTTATCAACAAAGCATTCTCACAGTTAACTGACAATGACCACAGAGCTATTCGATCAGCTGTCATATCACGGATTCCTGTGTTGGTTGAACTGAGCAGGGAGGGTGCATTCCATATGGTTATCAGTCATTTTAATGAAGAAAGTTCCCGTATCGTTACTGAACTTCACTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAACTTCACTTATTTGGCACCCTAGACTTGTCCAATTTGAGAAAGGATGATATTATAAATCCGTTTAATGGAAAGCTGGTTAAGGATCATCCACAAGGAGTCAAAGATTACTTAGAGAATATATCTAATTTCCCTAAGTACATCCGTGAAAATCCTATTCATGTGTCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCCAGTACGAAGGTGGTTCAGTTCTCAAGTTTCTCGAAATGTTTGATAGCTATCGTGTTGAACATTGTTTACGGCTGTGCCAAGAATATGGGATTATAGATGCAGCTGCATTCTTATTAGAAAGGGTGAGTGACATCCACAATTTATTGCGTGCGTGTATTGGTCTATGTCAACGGAACACACCCCGTTTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTCGATTCGTTTTGTGACCCATTGATGGATTCATGTGTTGAAGAAAGAGCATATGAAAGAAAAAATTATTTTGGAATGCTAGCTGGATCAGCAGATTCACAACTGAACAATGACACCTATAAAAGCAGTTGGAAAATTTCAAAGTCCCAAAATGGTCATATCTTGAGAAAATTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATAGGTTTTGTTCACCTTCCAACTATCATGGCCAAACTCCTGTCTGATAATGGTAGCCAAGAATTTGGCGATTTTAAACTTACCATATTGGGAATGCTTGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCCTTAATAGAGGATGATACGTTTTATACTATGAGTGTACTCAAGAAAGGGGCCTCCCATGGATATGCTCCCAGGAGTCTAGTGTGCTGTGTTTGTAATTGCCTTCTTACAAAAAATTCTGGTAGCTCTGGAATTCGTATTTTCAACTGTGGCCATGCAATTCATCTTCAATGTGAAGTTTCTGAAATTGAGTCAACGAGCAAAGGATCTTCATCTGGATGCCCTGTGTGTATGCCTAACCAGAAATCTCAGCAATCTAGAAACAAATCAATCATTGCAGCGAATGGCTTGGTCAATAAATTCTCATCAAAGCGCCAGTATCCCCATGGAAGTGCCATTCATCTGCATGACAGTGATTTATCAGACATTATGTATGGACAGCAACAGATATCGCGGTTTGATATCTTGAATAGCTTGCAGAAAAATCAGAGATTTATGCAAATAGAAAACTTACCTCAGTTGAAGCTAGCCCCACCTTCTGTTTACCATGAAAAGGTTAGTAAAGTGACAGACTTTCTGACTGGGGAAAGTAGCAATAGTTCTGCAGTTACAGAGAAACAAAATAGAAACAAGCAAAACCGGGAGCTGAGAGTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAAGTATATTTGGCAAAGAGAAAACAAATAAGCGGTGA 5571 0.4256 MSFVHSIMELDLRTFLPSATSTDDEADEAPHRTIDDILNDCDTSSSSPSPPSSPSTHTNSLPQKPSQLKPLQPSPDSLSQVKPVEFPDRTRVSRPFSSLFHGVRSNAKPGAALAAAAAASRSVPTPHAAAIMWRRRGAVANGAESSSVTAVGDDSDVSSSKGESGEYSEKFESEARGIETQSSESVSAVGERFESDAEIATDSKTGSADSNIQVRSDSDSDASVVSKEKRDLDEVDPDLENDMSSAPFDHDDHEFNGKTSLTYVDGDERVSVTDAAGETEELVNNGGSTMEDVKNDESVVGGDDGSSLGDVAELVEETLEELERIRAAKRAEKKLESSMRPLELAEELEKRHASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRVISSQTFRHEQGFAQVLAVHTNYIAVGMAKGLIVVVPSKYSIYHADNTDGKMLMLTVQGDRSHAPVTSMSFNQQGDLLLAGYGDGHVTLWDVQKGVVAKIISGEHTAPVIHTLFLGQDPQNTRQFKAVTGDCKGLVLLHSISVVPLLNRFSIKTQCLLDGQRTGLVLSASPLLSDDFSGNASPYSQGNTTASASSISSMMGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHQTALVVRLSPTLEVYAQLSRPDGIREGSMPYTAWKYMTQTCSSTENMSAEAVERVSLLAIAWERKVQVAKLVKSELKVYGKWSLDSPAIGLAWLDDQMLVVLTSTGQLYLFAKDGTMIHRTSFAVDGIGGDDLVSYHTHFINTFGNPEKAYHNSVAIRGASIYILGPTHVLVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAIHDAIMPFLVELLTSYVDEVFSYISVAFCNQIGKLDQSDDSNSTSNLVHSEIKEQYTRVGGVAVEFCCHIKRTDILFDEIFFRFLDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSPKESANALGYRMLVYLKYCFTGLAFPPGHGTILPTRLPSLRKELVEFLLEDSCTLKSQTVSDCVSRQPCLNLYLLLKLDPEATLDVLRCAFVEDAISNTDSSSVDSANRPIDEVKKGNDNVNETQNTLVQNTVDALIQIIDMNIVPPDTTSNSGDDESIKECPSKDIGYLFEFIAYYVALQRAKISKSVLCQILKYLTSDSQFSTNVSVNASTPKSREKQVLALLEVLPESEWDASFVLDLCERANYHQVCGLIHSVRHDYVVALDSYMKDVDEPVHAFSFINKAFSQLTDNDHRAIRSAVISRIPVLVELSREGAFHMVISHFNEESSRIVTELHSHPRSLFLYLKTLIELHLFGTLDLSNLRKDDIINPFNGKLVKDHPQGVKDYLENISNFPKYIRENPIHVSDDLIELYLELLCQYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDAAAFLLERVSDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSCVEERAYERKNYFGMLAGSADSQLNNDTYKSSWKISKSQNGHILRKLLSQFIKEIVEGMIGFVHLPTIMAKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDTFYTMSVLKKGASHGYAPRSLVCCVCNCLLTKNSGSSGIRIFNCGHAIHLQCEVSEIESTSKGSSSGCPVCMPNQKSQQSRNKSIIAANGLVNKFSSKRQYPHGSAIHLHDSDLSDIMYGQQQISRFDILNSLQKNQRFMQIENLPQLKLAPPSVYHEKVSKVTDFLTGESSNSSAVTEKQNRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR* 1857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1169 1856 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 493 IPR001680 GO:0005515
Apr10g1169 1856 MobiDBLite consensus disorder prediction 1812 1837 - -
Apr10g1169 1856 MobiDBLite consensus disorder prediction 39 79 - -
Apr10g1169 1856 Coils Coil 312 335 - -
Apr10g1169 1856 MobiDBLite consensus disorder prediction 159 177 - -
Apr10g1169 1856 MobiDBLite consensus disorder prediction 200 220 - -
Apr10g1169 1856 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Apr10g1169 1856 SMART WD40_4 443 484 IPR001680 GO:0005515
Apr10g1169 1856 MobiDBLite consensus disorder prediction 243 257 - -
Apr10g1169 1856 MobiDBLite consensus disorder prediction 221 236 - -
Apr10g1169 1856 PANTHER VACUOLAR PROTEIN SORTING VPS41 1491 1784 IPR045111 GO:0006623
Apr10g1169 1856 PANTHER VACUOLAR PROTEIN SORTING VPS41 308 1490 IPR045111 GO:0006623
Apr10g1169 1856 ProSiteProfiles Zinc finger RING-type profile. 1665 1713 IPR001841 -
Apr10g1169 1856 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 452 488 - -
Apr10g1169 1856 PANTHER - 1491 1784 - -
Apr10g1169 1856 PANTHER - 308 1490 - -
Apr10g1169 1856 Gene3D - 374 540 IPR015943 GO:0005515
Apr10g1169 1856 MobiDBLite consensus disorder prediction 36 95 - -
Apr10g1169 1856 MobiDBLite consensus disorder prediction 142 158 - -
Apr10g1169 1856 Pfam Golgi CORVET complex core vacuolar protein 8 933 1117 IPR025941 -
Apr10g1169 1856 MobiDBLite consensus disorder prediction 139 257 - -
Apr10g1169 1856 SUPERFAMILY RING/U-box 1658 1716 - -
Apr10g1169 1856 CDD RING-H2 1665 1714 - -
Apr10g1169 1856 SUPERFAMILY WD40 repeat-like 409 741 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1169 K20178 - gmx:100780869 2952.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1169 10 23907692 23919672 Apr10g1169 10 23907692 23919672 ECH