Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1168 ATGTCTTTCACTGCAACAAAGTTTGCACACTCTCCTCTCCCTCTCAATTCCACCAGTCCCAGATCCAATGACAAGCCTCTCTCTTTCTCTTTTGATCACTCCAAACCCAACCCTTCTTCTTCTTTCCTTGGATCCACTCGCAAGCTTCTTCGCTTCAATGCTCTCTCTAAGCCCCATGCTGCCCCTCGCTCATCATCATCATCTGTTGCTGCTGTTCTTCTTGAACAAACCTCTAATTTGCTTGTTACTAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATATTAGGGAGGGCCTTCGAAGACAAGTGTGCTGAGATGTATTATAGGGGGAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCAACTGGGTTCATCAAGCTTCTGAAGAAAGAAGATTATGTTGTGAGCACCTACAGGGACCATGTTCATGCATTGAGTAAGGGGGTCCCGTCTCGGGCTGTGATGAGTGAACTGTTTGGGAAGGCGACGGGATGCTGCCGAGGTCAGGGTGGTTCGATGCATATGTTCTCAAAAGAGCACAACGTGCTTGGTGGGTTTGCATTCATTGGTGAAGGAATTCCGGTTGCAATCGGGGCAGCATTTTCCAGTAAGTACAGAAGAGAGGCATTAAATCAGGCAGATGCTGATCAGGTGACATTGGCATTTTTTGGAGACGGGACTTGTAATAATGGGCAGTTCTATGAATGCCTAAACATGGCAGCCCTGTGGAAATTGCCAATTGTGTTTGTGGTGGAGAATAATTTGTGGGCTATTGGGATGTCACATCTTAGGGCAACTTCAGATCCTCAGATATGGAAGAAAGGGCCAGCATTTGGAATGCCAGGGATCCACGTCGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCACAGGAGGCAATTGGAAGGGCTAGAAGAGGAGAGGGACCAACTCTAGTGGAATGTGAGACCTATAGATTTAGAGGACACTCATTGGCTGACCCTGATGAGCTTCGTGACCCCGCTGAGAAAGAACATTATGCCGGTAGGGACCCCATCACTGCATTGAAGAAATACCTTATTGAGAACAATTTAGCCAATGAACAAGAATTGAAGGCCATAGAGAAGAAAATCGACGAGGTCCTCGAGGACGCCGTTGAGTTTGCAGATGAGAGCCCTCTTCCACCACGCAGCCAGCTTCTGGAGAATGTGTTTGCTGATCCAAAAGGTTTTGGAATTGGACCAGATGGCAGGTATAGATGTGAGGATCCAAAATTCACCGAAGGCACAGCTCATGTCTAA 1299 0.4711 MSFTATKFAHSPLPLNSTSPRSNDKPLSFSFDHSKPNPSSSFLGSTRKLLRFNALSKPHAAPRSSSSSVAAVLLEQTSNLLVTKEEGLELYEDMILGRAFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVAIGAAFSSKYRREALNQADADQVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGIHVDGMDVLKVREVAQEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKKYLIENNLANEQELKAIEKKIDEVLEDAVEFADESPLPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1168 432 MobiDBLite consensus disorder prediction 1 42 - -
Apr10g1168 432 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 84 405 IPR017597 GO:0004739|GO:0006086|GO:0043231
Apr10g1168 432 Coils Coil 363 390 - -
Apr10g1168 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 4 432 - -
Apr10g1168 432 CDD TPP_E1_PDC_ADC_BCADC 90 388 - -
Apr10g1168 432 Pfam Dehydrogenase E1 component 94 394 IPR001017 GO:0016624
Apr10g1168 432 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 4 432 - -
Apr10g1168 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 82 407 IPR029061 -
Apr10g1168 432 Gene3D - 53 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1168 Apr-Chr10 23901194 23904420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1168 5 432 Acyl Lipid Metabolism Gene Families AT1G01090 78.341 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1168 K00161 - gmx:100811207 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1168 10 23901194 23904420 Apr10g1168 10 23901194 23904420 ECH