Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1149 ATGGTGGTAGCTGCAGGTTCTAAGTTCAATTTGAGAAGAGGGAACGGTTCTTCTCATAACGTTATCAACGGTGATGGAGATCTTTCCAGAGTTAACAAAAGTGGGTGTTTCTCATCAATGGTAGAGGTGGATGGAGACCCTTTCTGTGTTTCATTCACCACTTTCAACATTCTGGCTCCAATTTACAAACGGATTGATCCACAGAACCAGGGCCTAAGAGAAAGTGACTTCAGATCATTCTGGTTGGCCAGGAATGAAAGGATTCTGGATTCTTTGATTTCTGAATCATCTTCAATTATGTGCCTCCAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGATACCATCTCTTCAAGCTTGCTCGAACCAATAACCGTGGAGATGGTCTTCTTACTGCTATACATAAAGAACATCTAAGAGTTGTGAATTATAGGGAGTTGTATTTTAATGATTTTGGTGATCGTGTTGCTCAGTTGTTACATGTTCAATCAGTTGCCCCCTTTGTACAAAACCAAAAAGGCAGTTTTCACCAAGAGTTTCTGATTGTGAACACTCATTTGTTATTTCCTCATGATTCAAGTCTATCTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTAGAATTGTATCAGAGAGAAAACAGGCTCAAACCTATTCCTATTATACTTTGTGGTGATTGGAACGGAAGCAAGCGCGGGCATGTATACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCATATGATATTGCCAATCAATACAGTGATAGTTATGCAGATGCCCACAAGTGGGTAAGTCACCGGAATCATAGAGGAAATATCTGTGGTGTTGACTTTATTTGGCTTTGCAATCCTAACCAATCACGTAAACCCTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGCATACTAAAATTCCAGTTACGAAAAGCATCATTATCTGAAGATGATGCGTTTGCCTTTCTGAAGGGTGATAACTATGCTGATTCTGTGACGTATTTTAGTTTCTCTGAAGCACTCCGTCAGGTAAAGTTGATTGGAGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGATCTATGGAATCAAGCAGACGTTGATGGAAATGGTGTCATTGACTTTGAAGAATTCAAGCAGAAGATTTGGAGTTCAACATGTCTGGAGCATGTGTTGGAAAATTTCAATGGGTGTATGGAGGATGCTAATACTGAGCCGGATCATGAAGCCATCGGTTTTAAGGTGAATAATGCAATGTTGTATCCACGTGAAGTGGAGAAAGGACTGTGGCCAGAAGATTACTCTCTTTCTGATCATGCTAAACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCAGGGTCACAAAACTGTAGCTAG 1419 0.4045 MVVAAGSKFNLRRGNGSSHNVINGDGDLSRVNKSGCFSSMVEVDGDPFCVSFTTFNILAPIYKRIDPQNQGLRESDFRSFWLARNERILDSLISESSSIMCLQEFWVGNEELVHMYEERLGDAGYHLFKLARTNNRGDGLLTAIHKEHLRVVNYRELYFNDFGDRVAQLLHVQSVAPFVQNQKGSFHQEFLIVNTHLLFPHDSSLSVVRLNQVYQILQYVELYQRENRLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQSRKPLKTSWAEAVFSILKFQLRKASLSEDDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWSSTCLEHVLENFNGCMEDANTEPDHEAIGFKVNNAMLYPREVEKGLWPEDYSLSDHAKLTAVFSPARMRCSGSQNCS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1149 472 Gene3D Endonuclease/exonuclease/phosphatase 38 465 IPR036691 -
Apr10g1149 472 SUPERFAMILY EF-hand 346 395 IPR011992 -
Apr10g1149 472 SMART efh_1 369 397 IPR002048 GO:0005509
Apr10g1149 472 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 6 466 - -
Apr10g1149 472 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Apr10g1149 472 SUPERFAMILY DNase I-like 46 265 IPR036691 -
Apr10g1149 472 Pfam Endonuclease/Exonuclease/phosphatase family 81 274 IPR005135 GO:0003824
Apr10g1149 472 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Apr10g1149 472 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 6 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1149 Apr-Chr10 23728008 23732234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1149 115 466 EF-hand Containing Proteins AT1G02270 65.909 4.75e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1149 - - gmx:100788191 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1149 10 23728008 23732234 Apr10g1149 10 23728008 23732234 ECH