Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1133 ATGGCGGAAAAATCATGCATCAAGCGCCTTCAAAAGGAATATAGAGCCCTTTGTAAAGAACCAGTTTCTCATGTTGTGGCTCGTCCTTCACCAAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGGACGCCTTTTGCAGGTGGATATTACTATGGAAAAATCAAATTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACGCCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATACTAACAGGGCTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGACTAGCAAAATCTTCCCTTTCATTCAATTGTAAGAATGCAACATTCAGGAAAATGTTCCCCGAGTACGTGGAGAAGTACAACCAACAGCAGCTTTCTGAGCAAGTTGCTTCAGAGCGGGTCTCATCAGAGATGTCTCATGACAAAAGTTCAAGGCCAGTGTTGGAAAAGAAGTTGGATTCCACAGGAGAAGACATGAGAAGAGTAGATGGGTTGAAGGATGTGAGAAAAAACAGAAAACCATTTCCAACGTGGATGATGTTGTTACTCTTCTCCATCTTTGGGGTTGTTATGGCATTACCCCTACTTCAGCTGTGA 717 0.431 MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQVASERVSSEMSHDKSSRPVLEKKLDSTGEDMRRVDGLKDVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1133 238 MobiDBLite consensus disorder prediction 168 196 - -
Apr10g1133 238 PANTHER BNAA06G11590D PROTEIN 3 238 - -
Apr10g1133 238 CDD UBCc 7 157 IPR000608 -
Apr10g1133 238 MobiDBLite consensus disorder prediction 174 196 - -
Apr10g1133 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Apr10g1133 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 238 - -
Apr10g1133 238 SUPERFAMILY UBC-like 5 157 IPR016135 -
Apr10g1133 238 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Apr10g1133 238 Pfam Ubiquitin-conjugating enzyme 9 132 IPR000608 -
Apr10g1133 238 SMART ubc_7 8 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1133 Apr-Chr10 23617075 23621184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1133 1 238 Miscellaneous Gene Families AT1G17280 77.406 3.07e-138 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1133 K04554 - gmx:100778181 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1133 10 23617075 23621184 Apr10g1133 10 23617075 23621184 ECH