Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1107 ATGAGCAGAGTAGGTGCTACATTGAACTTGGATTTGGCTACTGCAGTGAACAACCTGTTCAATCTTCCTGAAACCATGGAAAAGTTCATGTTCTCTTCTCGGCCTTATGAGAACCAAGAGACCAGAGGGGTCTCTACCATTCCAGTTGACATTTTGGATACCCCAAAAGAGTATATTTTCTTCATGGATGTTCCTGGTCTCTCCAAGTCTGAAATTCAGGTGACAATTGAAGATGAGCATACACTTGTTATAAGAAGCAACGGGAAAAGGAAGCGTCAAGATGGTGAGGATGAAGGATGCAAGTACCTTAGGCTGGAGAGGAGAGGGCCTAAGAATTTGCTGAGAAAGTTCCGTTTGCCTGAGAATGCCGATGTGTCAGCAATTACAGCTAAGTGTGAAAATGGAGTTTTGACTGTGATTGTTGACAAGCACCCTCCTCCTCCCAAATCCAAAATAGTTGAAGTAGCCATTGCTTGA 477 0.4361 MSRVGATLNLDLATAVNNLFNLPETMEKFMFSSRPYENQETRGVSTIPVDILDTPKEYIFFMDVPGLSKSEIQVTIEDEHTLVIRSNGKRKRQDGEDEGCKYLRLERRGPKNLLRKFRLPENADVSAITAKCENGVLTVIVDKHPPPPKSKIVEVAIA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1107 158 Pfam Hsp20/alpha crystallin family 50 155 IPR002068 -
Apr10g1107 158 Gene3D - 10 157 IPR008978 -
Apr10g1107 158 SUPERFAMILY HSP20-like chaperones 18 151 IPR008978 -
Apr10g1107 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 158 IPR002068 -
Apr10g1107 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 13 158 - -
Apr10g1107 158 PANTHER 17.4 KDA CLASS III HEAT SHOCK PROTEIN 13 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1107 Apr-Chr10 23396315 23397775 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1107 K13993 - gmx:100803161 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1107 10 23396315 23397775 Apr10g1107 10 23396315 23397775 ECH