Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1084 ATGTCTTGGGCAGGCCCTGAGGATATCTACCTTTCTACTTCACTTGCTAGCTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGGACACTTCGTTCATTTGATCAATTTGCTAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGCGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCCCCACACATGACACGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCAGAGAGGGAGGCTTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTGGACTAG 387 0.4574 MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDLD* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1084 128 CDD LSm1 12 82 IPR034104 GO:0000956
Apr10g1084 128 Gene3D - 12 125 - -
Apr10g1084 128 SMART Sm3 13 81 IPR001163 -
Apr10g1084 128 PANTHER LSM1 1 127 IPR044642 -
Apr10g1084 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Apr10g1084 128 Pfam LSM domain 14 80 IPR001163 -
Apr10g1084 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1084 Apr-Chr10 23214352 23217833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1084 K12620 - gmx:100306352 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1084 10 23214352 23217833 Apr10g1084 10 23214352 23217833 ECH